5B13 | pdb_00005b13

Crystal structure of phycoerythrin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5b13l_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
K	d5b13k_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
J	d5b13j_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
I	d5b13i_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
H	d5b13h_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
B [auth G]	d5b13g_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
G [auth F]	d5b13f_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
F [auth E]	d5b13e_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
E [auth D]	d5b13d_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
D [auth C]	d5b13c_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
C [auth B]	d5b13b_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)
A	d5b13a_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Palmaria palmata ) [TaxId: 2822 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Globin-like	8064816	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8064816	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8064816	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8064816	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8064816	3000554	SCOP2B (2022-06-29)
B [auth G]	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064815	4000579	SCOP2 (2022-06-29)
B [auth G]	SCOP2 Superfamily	Globin-like	8064816	3000554	SCOP2 (2022-06-29)
G [auth F]	SCOP2B Superfamily	Globin-like	8064874	3000554	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Globin-like	8064874	3000554	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Globin-like	8064874	3000554	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Globin-like	8064874	3000554	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Globin-like	8064874	3000554	SCOP2B (2022-06-29)
A	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064873	4000579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Globin-like	8064874	3000554	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13L1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
K	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13K1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
J	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13J1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
I	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13I1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
H	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13H1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
B [auth G]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13G1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
G [auth F]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13F1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
F [auth E]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13E1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
E [auth D]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13D1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
D [auth C]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13C1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
C [auth B]	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13B1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
A	PPP2R1A-like_HEAT, VPS15-like_hel	e5b13A1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
K	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
J	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
I	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B [auth G]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
G [auth F]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
F [auth E]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
E [auth D]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D [auth C]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
C [auth B]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth G], H, I, J, K, B [auth G], H, I, J, K, L	Phycoerythrin beta subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	Phycoerythrin alpha subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth G], H, I, J, K, B [auth G], H, I, J, K, L	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth G], H, I, J, K, B [auth G], H, I, J, K, L	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth G], H, I, J, K, B [auth G], H, I, J, K, L	IPR012128	Phycobilisome, alpha/beta subunit	Family
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	IPR012128	Phycobilisome, alpha/beta subunit	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.