5AYS | pdb_00005ays

Crystal structure of SAUGI/HSV UDG complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth B]	d5aysb1	Alpha and beta proteins (a/b)	Uracil-DNA glycosylase-like	Uracil-DNA glycosylase-like	Uracil-DNA glycosylase	automated matches	HHV-1 (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ],	SCOPe (2.08)
C [auth B]	d5aysb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	HHV-1 (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ],	SCOPe (2.08)
A	d5aysa1	Alpha and beta proteins (a/b)	Uracil-DNA glycosylase-like	Uracil-DNA glycosylase-like	Uracil-DNA glycosylase	automated matches	HHV-1 (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ],	SCOPe (2.08)
A	d5aysa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	HHV-1 (Human alphaherpesvirus 1 strain 17 ) [TaxId: 10299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	SAUGI	8047764	4005804	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Uracil-DNA glycosylase inhibitor protein	8054183	3000500	SCOP2 (2022-06-29)
B [auth C]	SCOP2B Superfamily	Uracil-DNA glycosylase inhibitor protein	8054183	3000500	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Uracil-DNA glycosylase-like	8044006	3001106	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Uracil-DNA glycosylase-like	8044006	3001106	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SAUGI	e5aysD1	A: a+b two layers	X: Cystatin-like	H: Uracil-DNA glycosylase inhibitor protein (From Topology)	T: Uracil-DNA glycosylase inhibitor protein	F: SAUGI	ECOD (1.6)
B [auth C]	SAUGI	e5aysC1	A: a+b two layers	X: Cystatin-like	H: Uracil-DNA glycosylase inhibitor protein (From Topology)	T: Uracil-DNA glycosylase inhibitor protein	F: SAUGI	ECOD (1.6)
C [auth B]	UDG	e5aysB1	A: a/b three-layered sandwiches	X: Uracil-DNA glycosylase-like (From Topology)	H: Uracil-DNA glycosylase-like (From Topology)	T: Uracil-DNA glycosylase-like	F: UDG	ECOD (1.6)
A	UDG	e5aysA1	A: a/b three-layered sandwiches	X: Uracil-DNA glycosylase-like (From Topology)	H: Uracil-DNA glycosylase-like (From Topology)	T: Uracil-DNA glycosylase-like	F: UDG	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.450.250	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
B [auth C]	3.10.450.250	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
C [auth B]	3.40.470.10	Alpha Beta	3-Layer(aba) Sandwich	Uracil-DNA Glycosylase, subunit E	Uracil-DNA glycosylase-like domain	CATH (4.2.0)
A	3.40.470.10	Alpha Beta	3-Layer(aba) Sandwich	Uracil-DNA Glycosylase, subunit E	Uracil-DNA glycosylase-like domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF03167	Uracil DNA glycosylase superfamily (UDG)	Uracil DNA glycosylase superfamily		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Uncharacterized protein	cation binding ion binding binding metal ion binding small molecule binding	-	-
A, C [auth B]	Uracil-DNA glycosylase	uracil DNA N-glycosylase activity hydrolase activity, acting on glycosyl bonds deaminated base DNA N-glycosylase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid hydrolase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	cellular response to stimulus response to stimulus base-excision repair, AP site formation via deaminated base removal primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus base-excision repair, AP site formation via deaminated base removal primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process base-excision repair, AP site formation DNA repair	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR043068	Uracil DNA glycosylase inhibitor superfamily	Homologous Superfamily
B [auth C], D	IPR009295	S. aureus uracil DNA glycosylase inhibitor	Family
A, C [auth B]	IPR002043	Uracil-DNA glycosylase family 1	Family
A, C [auth B]	IPR018085	Uracil-DNA glycosylase, active site	Active Site
A, C [auth B]	IPR036895	Uracil-DNA glycosylase-like domain superfamily	Homologous Superfamily
A, C [auth B]	IPR005122	Uracil-DNA glycosylase-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.