5A8B | pdb_00005a8b

Structure of a parallel dimer of the aureochrome 1a LOV domain from Phaeodactylum tricornutum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5a8bd_	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)
C	d5a8bc1	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)
C	d5a8bc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)
B	d5a8bb_	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)
A	d5a8ba_	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DUF5110	e5a8bD1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase	T: Glycoside hydrolase/deacetylase	F: DUF5110	ECOD (v294.1)
C	DUF5110	e5a8bC1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase	T: Glycoside hydrolase/deacetylase	F: DUF5110	ECOD (v294.1)
B	DUF5110	e5a8bB1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase	T: Glycoside hydrolase/deacetylase	F: DUF5110	ECOD (v294.1)
A	DUF5110	e5a8bA1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase	T: Glycoside hydrolase/deacetylase	F: DUF5110	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
C	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
B	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
A	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PTAUREO1A LOV2 DOMAIN	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR035965	PAS domain superfamily	Homologous Superfamily
A, B, C, D	IPR001610	PAC motif	Repeat
A, B, C, D	IPR000700	PAS-associated, C-terminal	Domain
A, B, C, D	IPR000014	PAS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.