5A2T

The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
I	SCOP2 Family	PepMV Coat protein-like	8047612	4005718	SCOP2 (2022-06-29)
I	SCOP2 Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2 (2022-06-29)
J	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	PepMV Coat protein-like	8089898	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Flexi_CP	e5a2tA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
B	Flexi_CP	e5a2tB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
C	Flexi_CP	e5a2tC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
D	Flexi_CP	e5a2tD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
E	Flexi_CP	e5a2tE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
F	Flexi_CP	e5a2tF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
G	Flexi_CP	e5a2tG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
H	Flexi_CP	e5a2tH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
I	Flexi_CP	e5a2tI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
J	Flexi_CP	e5a2tJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
K	Flexi_CP	e5a2tK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
L	Flexi_CP	e5a2tL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
M	Flexi_CP	e5a2tM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
N	Flexi_CP	e5a2tN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
O	Flexi_CP	e5a2tO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
P	Flexi_CP	e5a2tP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
Q	Flexi_CP	e5a2tQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
R	Flexi_CP	e5a2tR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
S	Flexi_CP	e5a2tS1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
T	Flexi_CP	e5a2tT1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
U	Flexi_CP	e5a2tU1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
V	Flexi_CP	e5a2tV1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
W	Flexi_CP	e5a2tW1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
X	Flexi_CP	e5a2tX1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)
Y	Flexi_CP	e5a2tY1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Papaya mosaic virus capsid protein	F: Flexi_CP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	PF00286	Viral coat protein (Flexi_CP)	Viral coat protein	Family includes coat proteins from Potexviruses and carlaviruses.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	COAT PROTEIN	structural molecule activity	-	viral capsid virion component protein-containing complex ribonucleoprotein complex
Z	BAMBOO MOSAIC VIRUS	-	-	-