5A1X | pdb_00005a1x

The structure of the COPI coat linkage III


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PSCOP2B SuperfamilySNARE-like 8082715 3001113 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySNARE-like 8082715 3001113 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Qe5a1xQ1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Pe5a1xP1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: TAXi_NF:ECOD (20:10:01)
He5a1xH1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Oe5a1xO1 A: jelly-rollX: Double-stranded beta-helixH: Double-stranded beta-helixT: MolybdopterinF:ECOD (20:10:01)
Oe5a1xO2 A: omega toxin-likeX: omega toxin-relatedH: omega toxin-relatedT:F:ECOD (20:10:01)
Ge5a1xG2 A: jelly-rollX: Double-stranded beta-helixH: Double-stranded beta-helixT: MolybdopterinF:ECOD (20:10:01)
Ge5a1xG4 A: omega toxin-likeX: omega toxin-relatedH: omega toxin-relatedT:F:ECOD (20:10:01)
Ne5a1xN1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Fe5a1xF1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Me5a1xM1 A: Chlorophyll a-b binding proteinX: Chlorophyll a-b binding proteinH: Chlorophyll a-b binding proteinT:F:ECOD (20:10:01)
Me5a1xM3 A: HTHX: HTHH: winged helix domainT: Glycos_transf_1F:ECOD (20:10:01)
Ee5a1xE1 A: HTHX: HTHH: winged helix domainT: Glycos_transf_1F:ECOD (20:10:01)
Le5a1xL1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
De5a1xD1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Ke5a1xK1 A: jelly-rollX: Double-stranded beta-helixH: Double-stranded beta-helixT: MolybdopterinF:ECOD (20:10:01)
Ce5a1xC1 A: jelly-rollX: Double-stranded beta-helixH: Double-stranded beta-helixT: MolybdopterinF:ECOD (20:10:01)
Je5a1xJ1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Ie5a1xI1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Be5a1xB1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)
Ae5a1xA1 A: Ribosomal protein S7X: Ribosomal protein S7H: Ribosomal protein S7T:F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H, P, Q
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
G, O
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
G, O
PF14806Coatomer beta subunit appendage platform (Coatomer_b_Cpla)Coatomer beta subunit appendage platformThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. Domain
F, N
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
E, M
PF16381Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla)Coatomer subunit gamma-1 C-terminal appendage platformCoatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ...Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 or ADP-ribosylation factor GTPase-activating protein. COPI-coated vesicles mediate retrograde transport from the Golgi back to the ER and intra-Golgi transport. The gamma-COPI is part of one of two subcomplexes that make up the heptameric coatomer complex along with the beta, delta and zeta subunits [1].
Domain
E, M
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
E, M
PF08752Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf)Coatomer gamma subunit appendage platform subdomainCOPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ...COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at UniProt:P53620, residue W776, which in yeast binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds to a Glo3p orthologue, ARFGAP2 [1].
Domain
D, L
PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
D, L
PF23953COPA/B TPR domain (TPR_COPA_B)COPA/B TPR domain- Repeat
D, L
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C, K
PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
C, K
PF23953COPA/B TPR domain (TPR_COPA_B)COPA/B TPR domain- Repeat
C, K
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H, P, Q
COATOMER SUBUNIT DELTA-
G, O
COATOMER SUBUNIT BETA
F, N
COATOMER SUBUNIT ZETA-1-
E, M
COATOMER SUBUNIT GAMMA-1
D, L
COATOMER SUBUNIT BETA'
C, K
COATOMER SUBUNIT ALPHA
A, B, I, J
ADP-RIBOSYLATION FACTOR 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H, P, Q
IPR011012Longin-like domain superfamilyHomologous Superfamily
H, P, Q
IPR027059Coatomer delta subunitFamily
H, P, Q
IPR022775AP complex, mu/sigma subunitDomain
H, P, Q
IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
H, P, Q
IPR028565Mu homology domainDomain
G, O
IPR016460Coatomer beta subunit (COPB1)Family
G, O
IPR016024Armadillo-type foldHomologous Superfamily
G, O
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
G, O
IPR011710Coatomer beta subunit, C-terminalDomain
G, O
IPR029446Coatomer beta subunit, appendage platform domainDomain
G, O
IPR011989Armadillo-like helicalHomologous Superfamily
F, N
IPR000804Clathrin adaptor complex, small chainConserved Site
F, N
IPR022775AP complex, mu/sigma subunitDomain
F, N
IPR039652Coatomer subunit zetaFamily
F, N
IPR011012Longin-like domain superfamilyHomologous Superfamily
E, M
IPR016024Armadillo-type foldHomologous Superfamily
E, M
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
E, M
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainDomain
E, M
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
E, M
IPR011989Armadillo-like helicalHomologous Superfamily
E, M
IPR032154Coatomer subunit gamma, C-terminalDomain
E, M
IPR017106Coatomer gamma subunitFamily
E, M
IPR037067Coatomer, gamma subunit, appendage domain superfamilyHomologous Superfamily
E, M
IPR012295TBP domain superfamilyHomologous Superfamily
E, M
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
D, L
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D, L
IPR016453Coatomer beta' subunit (COPB2)Family
D, L
IPR050844Coatomer complex subunitFamily
D, L
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
D, L
IPR001680WD40 repeatRepeat
D, L
IPR006692COPA/B, second beta-propeller domainDomain
D, L
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D, L
IPR056176COPA/B, TPR domainDomain
C, K
IPR019775WD40 repeat, conserved siteConserved Site
C, K
IPR016391Coatomer subunit alphaFamily
C, K
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C, K
IPR010714Coatomer, alpha subunit, C-terminalDomain
C, K
IPR006692COPA/B, second beta-propeller domainDomain
C, K
IPR047312Coatomer subunit alpha, WD Associated RegionDomain
C, K
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
C, K
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C, K
IPR056176COPA/B, TPR domainDomain
C, K
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C, K
IPR050844Coatomer complex subunitFamily
C, K
IPR001680WD40 repeatRepeat
A, B, I, J
IPR005225Small GTP-binding domainDomain
A, B, I, J
IPR045872ADP-ribosylation factor 1-5Family
A, B, I, J
IPR024156Small GTPase superfamily, ARF typeFamily
A, B, I, J
IPR006689Small GTPase superfamily, ARF/SAR typeFamily
A, B, I, J
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily