5A1W | pdb_00005a1w

The structure of the COPI coat linkage II


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8089854 3002022 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySNARE-like 8082715 3001113 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRase5a1wB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
ARase5a1wA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
CCoatomer_WDAD_Ne5a1wC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
CANAPC4_WD40_18e5a1wC3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)
CCoatomer_WDAD_Ce5a1wC2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
HAdap_comp_sub_1st_1e5a1wH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: Adap_comp_sub_1st_1ECOD (1.6)
HAdap_comp_sub_2nd_1e5a1wH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: Adap_comp_sub_2nd_1ECOD (1.6)
HClat_adaptor_se5a1wH3 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
GCoatamer_beta_Ce5a1wG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Coatamer_beta_CECOD (1.6)
GAdaptin_Ne5a1wG4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
GCoatomer_b_Cplae5a1wG3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_b_CplaECOD (1.6)
FClat_adaptor_se5a1wF1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
EAdaptin_Ne5a1wE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
DANAPC4_WD40_5e5a1wD3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
DCoatomer_WDAD_Ne5a1wD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
DCoatomer_WDAD_Ce5a1wD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
PF14806Coatomer beta subunit appendage platform (Coatomer_b_Cpla)Coatomer beta subunit appendage platformThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. Domain
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
ADP-RIBOSYLATION FACTOR 1
COATOMER SUBUNIT ALPHA
COATOMER SUBUNIT DELTA-
COATOMER SUBUNIT BETA
COATOMER SUBUNIT ZETA-1-
COATOMER SUBUNIT GAMMA-1
COATOMER SUBUNIT BETA'

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR005225Small GTP-binding domainDomain
A, B
IPR045872ADP-ribosylation factor 1-5Family
A, B
IPR024156Small GTPase superfamily, ARF typeFamily
A, B
IPR006689Small GTPase superfamily, ARF/SAR typeFamily
A, B
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR016391Coatomer subunit alphaFamily
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR010714Coatomer, alpha subunit, C-terminalDomain
IPR006692COPA/B, second beta-propeller domainDomain
IPR047312Coatomer subunit alpha, WD Associated RegionDomain
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR056176COPA/B, TPR domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR050844Coatomer complex subunitFamily
IPR001680WD40 repeatRepeat
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR027059Coatomer delta subunitFamily
IPR022775AP complex, mu/sigma subunitDomain
IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
IPR028565Mu homology domainDomain
IPR016460Coatomer beta subunit (COPB1)Family
IPR016024Armadillo-type foldHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR011710Coatomer beta subunit, C-terminalDomain
IPR029446Coatomer beta subunit, appendage platform domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR000804Clathrin adaptor complex, small chainConserved Site
IPR022775AP complex, mu/sigma subunitDomain
IPR039652Coatomer subunit zetaFamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainDomain
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR032154Coatomer subunit gamma, C-terminalDomain
IPR017106Coatomer gamma subunitFamily
IPR037067Coatomer, gamma subunit, appendage domain superfamilyHomologous Superfamily
IPR012295TBP domain superfamilyHomologous Superfamily
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR016453Coatomer beta' subunit (COPB2)Family
IPR050844Coatomer complex subunitFamily
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001680WD40 repeatRepeat
IPR006692COPA/B, second beta-propeller domainDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR056176COPA/B, TPR domainDomain