4ZU7 | pdb_00004zu7

X-ray structure if the QdtA 3,4-ketoisomerase from Thermoanaerobacterium thermosaccharolyticum, double mutant Y17R/R97H, in complex with TDP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d4zu7h_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
G	d4zu7g_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
F	d4zu7f1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
F	d4zu7f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
E	d4zu7e1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
E	d4zu7e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
D	d4zu7d1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
D	d4zu7d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
C	d4zu7c1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
C	d4zu7c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
B	d4zu7b1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
B	d4zu7b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
A	d4zu7a1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)
A	d4zu7a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermoanaerobacterium thermosaccharolyticum ) [TaxId: 1517 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RmlC-like cupins	8086548	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	FdtA	e4zu7H1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
G	FdtA	e4zu7G1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
F	FdtA	e4zu7F1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
E	FdtA	e4zu7E1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
D	FdtA	e4zu7D1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
C	FdtA	e4zu7C1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
B	FdtA	e4zu7B1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)
A	FdtA	e4zu7A1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: FdtA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
G	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
F	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
E	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
D	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008894	Sugar 3,4-ketoisomerase QdtA, cupin domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.