4ZRV | pdb_00004zrv

Structure of cow mincle CRD complexed with trehalose mono butyrate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4zrvc1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d4zrvc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d4zrvb1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d4zrvb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d4zrva1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d4zrva2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	C-type lectin-like	8065480	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8065480	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8065480	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Stap_Strp_toxin	e4zrvC1	A: alpha bundles	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F: Stap_Strp_toxin	ECOD (develop294)
B	Stap_Strp_toxin	e4zrvB1	A: alpha bundles	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F: Stap_Strp_toxin	ECOD (develop294)
A	Stap_Strp_toxin	e4zrvA1	A: alpha bundles	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F: Stap_Strp_toxin	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Mincle CRD	binding carbohydrate binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cation binding ion binding metal ion binding small molecule binding lipid binding glycolipid binding carbohydrate derivative binding	biological process involved in interspecies interaction between organisms antifungal innate immune response response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to fungus immune system process defense response to other organism response to stress innate immune response biological process involved in interspecies interaction between organisms antifungal innate immune response response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to fungus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus response to fungus cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation cell communication Fc receptor signaling pathway immune response-regulating signaling pathway regulation of response to stimulus regulation of immune response cellular process regulation of immune system process signal transduction Fc-gamma receptor signaling pathway multicellular organismal process cellular developmental process cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response leukocyte activation T cell activation involved in immune response T cell activation cell differentiation leukocyte activation involved in immune response anatomical structure development T cell differentiation lymphocyte activation involved in immune response developmental process hemopoiesis cell activation T cell differentiation involved in immune response immune effector process leukocyte differentiation positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process defense response to bacterium response to bacterium	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cellular anatomical structure cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cellular anatomical structure cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm vesicle organelle membrane endocytic vesicle cell periphery cell surface plasma membrane external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C	IPR033989	CD209-like, C-type lectin-like domain	Domain
A, B, C	IPR001304	C-type lectin-like	Domain
A, B, C	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C	IPR050111	C-type lectin and snaclec domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.