4ZQW | pdb_00004zqw

CdiI from Escherichia coli EC869 in complex with a macrocyclic peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth D]	SCOP2B Superfamily	CdiI-like	8088865	3000429	SCOP2B (2022-06-29)
A [auth B]	SCOP2 Family	CdiI-like	8088864	4001823	SCOP2 (2022-06-29)
A [auth B]	SCOP2 Superfamily	CdiI-like	8088865	3000429	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	Ble-like_N	e4zqwD1	A: a/b three-layered sandwiches	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Ble-like_N	ECOD (v294.1)
A [auth B]	Ble-like_N	e4zqwB1	A: a/b three-layered sandwiches	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Ble-like_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	3.40.1590.10	Alpha Beta	3-Layer(aba) Sandwich	NMB0488-like fold	NMB0488-like	CATH (4.3.0)
A [auth B]	3.40.1590.10	Alpha Beta	3-Layer(aba) Sandwich	NMB0488-like fold	NMB0488-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C [auth D]	Immunity protein CdiI-o11	-	-	-
B [auth A], D [auth C]	macrocyclic peptide	cation binding ion binding binding metal ion binding small molecule binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity DNA endonuclease activity deoxyribonuclease I activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity cation binding ion binding binding metal ion binding small molecule binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity DNA endonuclease activity deoxyribonuclease I activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity DNA endonuclease activity, producing 5'-phosphomonoesters catalytic activity toxin activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C [auth D]	IPR037891	Immunity protein Cdil-like superfamily	Homologous Superfamily
A [auth B], C [auth D]	IPR009888	Immunity protein CdiI, Proteobacteria type	Family
B [auth A], D [auth C]	IPR048745	Toxin CdiA-like, helical domain	Domain
B [auth A], D [auth C]	IPR006914	VENN motif-containing domain	Domain
B [auth A], D [auth C]	IPR033799	CdiA toxin, EC869-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.