4YM7

RNA polymerase I structure with an alternative dimer hinge

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
U [auth BF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
CC [auth FF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
JA [auth CF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
NB [auth EF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
YA [auth DF]	SCOP2B Superfamily	RPB6/omega subunit-like	8042688	3000189	SCOP2B (2022-06-29)
CB [auth DJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
GC [auth FJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
J [auth AJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
NA [auth CJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
RB [auth EJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
Y [auth BJ]	SCOP2B Superfamily	RNA polymerase subunit RPB10	8042692	3001213	SCOP2B (2022-06-29)
DB [auth DK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
HC [auth FK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
K [auth AK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
OA [auth CK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
SB [auth EK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
Z [auth BK]	SCOP2B Superfamily	RBP11-like subunits of RNA polymerase	8080736	3001655	SCOP2B (2022-06-29)
AA [auth BL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
EB [auth DL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
IC [auth FL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
L [auth AL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
PA [auth CL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
TB [auth EL]	SCOP2B Superfamily	RNA polymerase subunits	8042695	3001823	SCOP2B (2022-06-29)
XA [auth DE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
XA [auth DE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
BC [auth FE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
BC [auth FE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
IA [auth CE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
IA [auth CE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
MB [auth EE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
MB [auth EE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
T [auth BE]	SCOP2B Superfamily	Eukaryotic RPB5 N-terminal domain	8044454	3000444	SCOP2B (2022-06-29)
T [auth BE]	SCOP2B Superfamily	RPB5-like RNA polymerase subunit	8035939	3001722	SCOP2B (2022-06-29)
AB [auth DH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)
AB [auth DH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
EC [auth FH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
EC [auth FH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
LA [auth CH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)
LA [auth CH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
PB [auth EH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)
PB [auth EH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
W [auth BH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8041967	3002702	SCOP2B (2022-06-29)
W [auth BH]	SCOP2B Superfamily	RBP8/CHS5 N-terminal domain-like	8093392	3002702	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
GA [auth CC]	PF01193	e4ym7CC2	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
GA [auth CC]	PF01000	e4ym7CC1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
C [auth AC]	PF01193	e4ym7AC2	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
C [auth AC]	PF01000	e4ym7AC1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
KB [auth EC]	PF01193	e4ym7EC2	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
KB [auth EC]	PF01000	e4ym7EC1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
R [auth BC]	PF01193	e4ym7BC1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
R [auth BC]	PF01000	e4ym7BC2	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
VA [auth DC]	PF01193	e4ym7DC1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
VA [auth DC]	PF01000	e4ym7DC2	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
ZB [auth FC]	PF01193	e4ym7FC2	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF01193	ECOD (1.6)
ZB [auth FC]	PF01000	e4ym7FC1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: PF01000	ECOD (1.6)
WA [auth DD]	PF08203	e4ym7DD1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
AC [auth FD]	PF08203	e4ym7FD1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
D [auth AD]	PF08203	e4ym7AD1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
HA [auth CD]	PF08203	e4ym7CD1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
LB [auth ED]	PF08203	e4ym7ED1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
S [auth BD]	PF08203	e4ym7BD1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF08203	ECOD (1.6)
U [auth BF]	PF01192	e4ym7BF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
CC [auth FF]	PF01192	e4ym7FF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
F [auth AF]	PF01192	e4ym7AF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
JA [auth CF]	PF01192	e4ym7CF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
NB [auth EF]	PF01192	e4ym7EF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
YA [auth DF]	PF01192	e4ym7DF1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RPB6	F: PF01192	ECOD (1.6)
OB [auth EG]	PF17875	e4ym7EG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
OB [auth EG]	PF03876	e4ym7EG2	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
V [auth BG]	PF17875	e4ym7BG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
V [auth BG]	PF03876	e4ym7BG2	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
DC [auth FG]	PF17875	e4ym7FG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
DC [auth FG]	PF03876	e4ym7FG2	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
G [auth AG]	PF17875	e4ym7AG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
G [auth AG]	PF03876	e4ym7AG2	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
KA [auth CG]	PF17875	e4ym7CG2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
KA [auth CG]	PF03876	e4ym7CG1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
ZA [auth DG]	PF17875	e4ym7DG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF17875	ECOD (1.6)
ZA [auth DG]	PF03876	e4ym7DG2	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: PF03876	ECOD (1.6)
A [auth AA]	PF00623	e4ym7AA9	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
A [auth AA]	PF00623	e4ym7AA6	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
A [auth AA]	F_UNCLASSIFIED	e4ym7AA3	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth AA]	F_UNCLASSIFIED	e4ym7AA1	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth AA]	PF04997	e4ym7AA2	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
A [auth AA]	PF04998	e4ym7AA8	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
A [auth AA]	F_UNCLASSIFIED	e4ym7AA4	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth AA]	PF04998,PF05000	e4ym7AA7	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
A [auth AA]	PF04983	e4ym7AA5	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
EA [auth CA]	PF00623	e4ym7CA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
EA [auth CA]	PF00623	e4ym7CA3	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
EA [auth CA]	F_UNCLASSIFIED	e4ym7CA6	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
EA [auth CA]	F_UNCLASSIFIED	e4ym7CA5	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
EA [auth CA]	PF04997	e4ym7CA7	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
EA [auth CA]	PF04998	e4ym7CA9	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
EA [auth CA]	F_UNCLASSIFIED	e4ym7CA1	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
EA [auth CA]	PF04998,PF05000	e4ym7CA8	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
EA [auth CA]	PF04983	e4ym7CA4	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
IB [auth EA]	PF00623	e4ym7EA7	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
IB [auth EA]	PF00623	e4ym7EA5	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
IB [auth EA]	F_UNCLASSIFIED	e4ym7EA2	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
IB [auth EA]	F_UNCLASSIFIED	e4ym7EA9	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
IB [auth EA]	PF04997	e4ym7EA3	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
IB [auth EA]	PF04998	e4ym7EA4	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
IB [auth EA]	F_UNCLASSIFIED	e4ym7EA8	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
IB [auth EA]	PF04998,PF05000	e4ym7EA6	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
IB [auth EA]	PF04983	e4ym7EA1	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
P [auth BA]	PF00623	e4ym7BA3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
P [auth BA]	PF00623	e4ym7BA6	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
P [auth BA]	F_UNCLASSIFIED	e4ym7BA8	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth BA]	F_UNCLASSIFIED	e4ym7BA1	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth BA]	PF04997	e4ym7BA2	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
P [auth BA]	PF04998	e4ym7BA4	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
P [auth BA]	F_UNCLASSIFIED	e4ym7BA9	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth BA]	PF04998,PF05000	e4ym7BA7	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
P [auth BA]	PF04983	e4ym7BA5	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
TA [auth DA]	PF00623	e4ym7DA4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
TA [auth DA]	PF00623	e4ym7DA6	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
TA [auth DA]	F_UNCLASSIFIED	e4ym7DA1	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
TA [auth DA]	F_UNCLASSIFIED	e4ym7DA3	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
TA [auth DA]	PF04997	e4ym7DA8	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
TA [auth DA]	PF04998	e4ym7DA2	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
TA [auth DA]	F_UNCLASSIFIED	e4ym7DA5	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
TA [auth DA]	PF04998,PF05000	e4ym7DA7	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
TA [auth DA]	PF04983	e4ym7DA9	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
XB [auth FA]	PF00623	e4ym7FA9	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00623	ECOD (1.6)
XB [auth FA]	PF00623	e4ym7FA2	A: a+b two layers	X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: PF00623	ECOD (1.6)
XB [auth FA]	F_UNCLASSIFIED	e4ym7FA8	A: a+b two layers	X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
XB [auth FA]	F_UNCLASSIFIED	e4ym7FA7	A: a+b two layers	X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)	T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	F: F_UNCLASSIFIED	ECOD (1.6)
XB [auth FA]	PF04997	e4ym7FA6	A: a+b complex topology	X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)	T: N-terminal domain in RNA-polymerase beta-prime subunit	F: PF04997	ECOD (1.6)
XB [auth FA]	PF04998	e4ym7FA4	A: a+b complex topology	X: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: central helical domain in RNA-polymerase beta-prime subunit	F: PF04998	ECOD (1.6)
XB [auth FA]	F_UNCLASSIFIED	e4ym7FA3	A: a+b complex topology	X: helical domain in yeast RNA-polymerases	H: third helical domain in yeast RNA-polymerase I RPA190 subunit (From Topology)	T: third helical domain in yeast RNA-polymerase I RPA190 subunit	F: F_UNCLASSIFIED	ECOD (1.6)
XB [auth FA]	PF04998,PF05000	e4ym7FA5	A: a+b complex topology	X: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: second helical domain in RNA-polymerase beta-prime subunit	F: PF04998,PF05000	ECOD (1.6)
XB [auth FA]	PF04983	e4ym7FA1	A: a+b complex topology	X: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)	T: first helical domain in RNA-polymerase beta-prime subunit	F: PF04983	ECOD (1.6)
CB [auth DJ]	PF01194	e4ym7DJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
GC [auth FJ]	PF01194	e4ym7FJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
J [auth AJ]	PF01194	e4ym7AJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
NA [auth CJ]	PF01194	e4ym7CJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
RB [auth EJ]	PF01194	e4ym7EJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
Y [auth BJ]	PF01194	e4ym7BJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: PF01194	ECOD (1.6)
DB [auth DK]	PF13656	e4ym7DK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
HC [auth FK]	PF13656	e4ym7FK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
K [auth AK]	PF13656	e4ym7AK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
OA [auth CK]	PF13656	e4ym7CK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
SB [auth EK]	PF13656	e4ym7EK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
Z [auth BK]	PF13656	e4ym7BK1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: PF13656	ECOD (1.6)
AA [auth BL]	PF03604	e4ym7BL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
EB [auth DL]	PF03604	e4ym7DL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
IC [auth FL]	PF03604	e4ym7FL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
L [auth AL]	PF03604	e4ym7AL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
PA [auth CL]	PF03604	e4ym7CL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
TB [auth EL]	PF03604	e4ym7EL1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF03604	ECOD (1.6)
BA [auth BM]	PF06870	e4ym7BM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
FB [auth DM]	PF06870	e4ym7DM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
JC [auth FM]	PF06870	e4ym7FM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
M [auth AM]	PF06870	e4ym7AM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
QA [auth CM]	PF06870	e4ym7CM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
UB [auth EM]	PF06870	e4ym7EM1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF06870	ECOD (1.6)
CA [auth BN]	PF08208	e4ym7BN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
GB [auth DN]	PF08208	e4ym7DN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
KC [auth FN]	PF08208	e4ym7FN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
N [auth AN]	PF08208	e4ym7AN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
RA [auth CN]	PF08208	e4ym7CN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
VB [auth EN]	PF08208	e4ym7EN1	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: PF08208	ECOD (1.6)
UA [auth DB]	PF00562	e4ym7DB7	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
UA [auth DB]	PF00562	e4ym7DB2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
UA [auth DB]	PF04563,PF04565	e4ym7DB6	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
UA [auth DB]	PF04561	e4ym7DB4	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
UA [auth DB]	PF00562	e4ym7DB3	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
UA [auth DB]	PF00562,PF04560	e4ym7DB5	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
UA [auth DB]	PF06883	e4ym7DB1	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
B [auth AB]	PF00562	e4ym7AB2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
B [auth AB]	PF00562	e4ym7AB6	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
B [auth AB]	PF04563,PF04565	e4ym7AB4	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
B [auth AB]	PF04561	e4ym7AB1	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
B [auth AB]	PF00562	e4ym7AB5	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
B [auth AB]	PF00562,PF04560	e4ym7AB7	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
B [auth AB]	PF06883	e4ym7AB3	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
FA [auth CB]	PF00562	e4ym7CB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
FA [auth CB]	PF00562	e4ym7CB5	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
FA [auth CB]	PF04563,PF04565	e4ym7CB6	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
FA [auth CB]	PF04561	e4ym7CB3	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
FA [auth CB]	PF00562	e4ym7CB7	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
FA [auth CB]	PF00562,PF04560	e4ym7CB4	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
FA [auth CB]	PF06883	e4ym7CB2	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
JB [auth EB]	PF00562	e4ym7EB4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
JB [auth EB]	PF00562	e4ym7EB3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
JB [auth EB]	PF04563,PF04565	e4ym7EB7	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
JB [auth EB]	PF04561	e4ym7EB6	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
JB [auth EB]	PF00562	e4ym7EB2	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
JB [auth EB]	PF00562,PF04560	e4ym7EB5	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
JB [auth EB]	PF06883	e4ym7EB1	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
Q [auth BB]	PF00562	e4ym7BB3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
Q [auth BB]	PF00562	e4ym7BB7	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
Q [auth BB]	PF04563,PF04565	e4ym7BB2	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
Q [auth BB]	PF04561	e4ym7BB4	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
Q [auth BB]	PF00562	e4ym7BB1	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
Q [auth BB]	PF00562,PF04560	e4ym7BB5	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
Q [auth BB]	PF06883	e4ym7BB6	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
YB [auth FB]	PF00562	e4ym7FB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF00562	ECOD (1.6)
YB [auth FB]	PF00562	e4ym7FB4	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00562	ECOD (1.6)
YB [auth FB]	PF04563,PF04565	e4ym7FB2	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF04563,PF04565	ECOD (1.6)
YB [auth FB]	PF04561	e4ym7FB5	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: PF04561	ECOD (1.6)
YB [auth FB]	PF00562	e4ym7FB3	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562	ECOD (1.6)
YB [auth FB]	PF00562,PF04560	e4ym7FB7	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: PF00562,PF04560	ECOD (1.6)
YB [auth FB]	PF06883	e4ym7FB6	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: PF06883	ECOD (1.6)
XA [auth DE]	PF01191	e4ym7DE1	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
XA [auth DE]	PF03871	e4ym7DE2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
BC [auth FE]	PF01191	e4ym7FE1	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
BC [auth FE]	PF03871	e4ym7FE2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
E [auth AE]	PF01191	e4ym7AE1	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
E [auth AE]	PF03871	e4ym7AE2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
IA [auth CE]	PF01191	e4ym7CE1	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
IA [auth CE]	PF03871	e4ym7CE2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
MB [auth EE]	PF01191	e4ym7EE2	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
MB [auth EE]	PF03871	e4ym7EE1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
T [auth BE]	PF01191	e4ym7BE2	A: a+b two layers	X: RPB5-like RNA polymerase subunit (From Topology)	H: RPB5-like RNA polymerase subunit (From Topology)	T: RPB5-like RNA polymerase subunit	F: PF01191	ECOD (1.6)
T [auth BE]	PF03871	e4ym7BE1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Eukaryotic RPB5 N-terminal domain (From Topology)	T: Eukaryotic RPB5 N-terminal domain	F: PF03871	ECOD (1.6)
AB [auth DH]	PF03870	e4ym7DH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
EC [auth FH]	PF03870	e4ym7FH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
H [auth AH]	PF03870	e4ym7AH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
LA [auth CH]	PF03870	e4ym7CH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
PB [auth EH]	PF03870	e4ym7EH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
W [auth BH]	PF03870	e4ym7BH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF03870	ECOD (1.6)
BB [auth DI]	PF01096	e4ym7DI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
BB [auth DI]	PF02150	e4ym7DI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)
FC [auth FI]	PF01096	e4ym7FI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
FC [auth FI]	PF02150	e4ym7FI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)
I [auth AI]	PF01096	e4ym7AI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
I [auth AI]	PF02150	e4ym7AI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)
MA [auth CI]	PF01096	e4ym7CI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
MA [auth CI]	PF02150	e4ym7CI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)
QB [auth EI]	PF01096	e4ym7EI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
QB [auth EI]	PF02150	e4ym7EI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)
X [auth BI]	PF01096	e4ym7BI2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01096	ECOD (1.6)
X [auth BI]	PF02150	e4ym7BI1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF02150	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)	RNA polymerase Rpb3/Rpb11 dimerisation domain	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.	Domain
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	PF01000	RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)	RNA polymerase Rpb3/RpoA insert domain	Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal	Domain
AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], WA [auth DD]	PF08203	Yeast RNA polymerase I subunit RPA14 (RNA_polI_A14)	Yeast RNA polymerase I subunit RPA14	-	Family
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	PF01192	RNA polymerase Rpb6 (RNA_pol_Rpb6)	RNA polymerase Rpb6	-	Family
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	PF17875	RPA43 OB domain in RNA Pol I (RPA43_OB)	RPA43 OB domain in RNA Pol I	This is OB domain found in RPA43 proteins (DNA-directed RNA polymerase I subunit RPA43, also known as A43) in yeast. Functional analysis of RNA polymerase I show that, subunits A14 and A43 form the heterodimer A14/43, which is distantly related to Rp ...	This is OB domain found in RPA43 proteins (DNA-directed RNA polymerase I subunit RPA43, also known as A43) in yeast. Functional analysis of RNA polymerase I show that, subunits A14 and A43 form the heterodimer A14/43, which is distantly related to Rpb4/7 in Pol II and C17/25 in Pol III [1]. Crystal structure analysis show that A43-A14 heterodimer forms the stalk that provides a platform for initiation factors and interacts with newly synthesized RNA [3].	Domain
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	PF03876	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N)	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at leas ...	Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at least one of the subunits contacted by the transcription factor TIF-IA [2]. The N terminus of Rpb7p/Rpc25p/MJ0397 has a SHS2 domain that is involved in protein-protein interaction [3].	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	PF00623	RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)	RNA polymerase Rpb1, domain 2	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion [1,2].	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	PF05000	RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)	RNA polymerase Rpb1, domain 4	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	PF04983	RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)	RNA polymerase Rpb1, domain 3	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	PF04998	RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)	RNA polymerase Rpb1, domain 5	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	PF04997	RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)	RNA polymerase Rpb1, domain 1	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].	Domain
CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], Y [auth BJ]	PF01194	RNA polymerases N / 8 kDa subunit (RNA_pol_N)	RNA polymerases N / 8 kDa subunit	-	Domain
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)	RNA polymerase Rpb3/Rpb11 dimerisation domain	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.	Domain
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	PF13656	RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2)	RNA polymerase Rpb3/Rpb11 dimerisation domain	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp. Many of the members of this family carry only the N-terminal region of Rpb11.	Domain
AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], TB [auth EL]	PF03604	DNA directed RNA polymerase, 7 kDa subunit (DNA_RNApol_7kD)	DNA directed RNA polymerase, 7 kDa subunit	-	Domain
BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], UB [auth EM]	PF06870	A49-like RNA polymerase I associated factor (RNA_pol_I_A49)	A49-like RNA polymerase I associated factor	-	Family
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF06883	RNA polymerase I, Rpa2 specific domain (RNA_pol_Rpa2_4)	RNA polymerase I, Rpa2 specific domain	This domain is found between domain 3 (Pfam:PF04565) and domain 5 (Pfam:PF04565), but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate mo ...	This domain is found between domain 3 (Pfam:PF04565) and domain 5 (Pfam:PF04565), but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [1].	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF04561	RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)	RNA polymerase Rpb2, domain 2	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain [1]. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF04560	RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)	RNA polymerase Rpb2, domain 7	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF04565	RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)	RNA polymerase Rpb2, domain 3	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF04563	RNA polymerase beta subunit (RNA_pol_Rpb2_1)	RNA polymerase beta subunit	-	Family
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	PF00562	RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)	RNA polymerase Rpb2, domain 6	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).	Domain
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	PF01191	RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C)	RNA polymerase Rpb5, C-terminal domain	The assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain.	Domain
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	PF03871	RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N)	RNA polymerase Rpb5, N-terminal domain	Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ...	Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure [3]. This module is important for positioning the downstream DNA.	Domain
AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], W [auth BH]	PF03870	RNA polymerase Rpb8 (RNA_pol_Rpb8)	RNA polymerase Rpb8	-	Family
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	PF02150	RNA polymerases M/15 Kd subunit (RNA_POL_M_15KD)	RNA polymerases M/15 Kd subunit	-	Domain
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	PF01096	Transcription factor S-II (TFIIS) (TFIIS_C)	Transcription factor S-II (TFIIS)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	DNA-directed RNA polymerases I and III subunit RPAC1	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA polymerase III activity protein binding protein dimerization activity	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process transcription by RNA polymerase III cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process transcription by RNA polymerase III cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process organic cyclic compound metabolic process biosynthetic process tRNA transcription tRNA transcription by RNA polymerase III organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process macromolecule metabolic process transcription by RNA polymerase I rRNA transcription rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I DNA-templated transcription termination termination of RNA polymerase I transcription termination of RNA polymerase III transcription transcription initiation at RNA polymerase III promoter DNA-templated transcription initiation transcription elongation by RNA polymerase I DNA-templated transcription elongation transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase III complex nucleoplasm
AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], WA [auth DD]	DNA-directed RNA polymerase I subunit RPA14	DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription transcription elongation by RNA polymerase I DNA-templated transcription elongation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation cellular component organization regulation of cellular component size biological regulation regulation of biological quality regulation of cell size regulation of anatomical structure size	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	DNA-directed RNA polymerases I, II, and III subunit RPABC2	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process transcription by RNA polymerase III tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III ncRNA metabolic process transcription by RNA polymerase I rRNA transcription rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I DNA-templated transcription termination termination of RNA polymerase I transcription RNA-templated transcription termination of RNA polymerase III transcription transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation transcription initiation at RNA polymerase III promoter transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription elongation by RNA polymerase I transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase II, holoenzyme nucleoplasm RNA polymerase II, core complex RNA polymerase III complex cytoplasm
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	DNA-directed RNA polymerase I subunit RPA43	DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription elongation by RNA polymerase I DNA-templated transcription elongation transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	DNA-directed RNA polymerase I subunit RPA190	protein-containing complex binding chromatin binding binding promoter-specific chromatin binding DNA binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity protein-containing complex binding chromatin binding binding promoter-specific chromatin binding DNA binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding ion binding metal ion binding small molecule binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription transcription elongation by RNA polymerase I DNA-templated transcription elongation transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I complex nuclear protein-containing complex transferase complex catalytic complex transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex
CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], Y [auth BJ]	DNA-directed RNA polymerases I, II, and III subunit RPABC5	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process transcription by RNA polymerase III tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III ncRNA metabolic process transcription by RNA polymerase I rRNA transcription rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I DNA-templated transcription termination termination of RNA polymerase I transcription RNA-templated transcription termination of RNA polymerase III transcription transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation transcription initiation at RNA polymerase III promoter transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription elongation by RNA polymerase I transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase II, holoenzyme nucleoplasm RNA polymerase II, core complex RNA polymerase III complex
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	DNA-directed RNA polymerases I and III subunit RPAC2	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding protein dimerization activity	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription termination of RNA polymerase III transcription transcription by RNA polymerase III transcription initiation at RNA polymerase III promoter DNA-templated transcription initiation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription elongation by RNA polymerase I DNA-templated transcription elongation tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase III complex nucleoplasm
AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], TB [auth EL]	DNA-directed RNA polymerases I, II, and III subunit RPABC4	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process transcription by RNA polymerase III tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III ncRNA metabolic process transcription by RNA polymerase I rRNA transcription rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I DNA-templated transcription termination termination of RNA polymerase I transcription RNA-templated transcription termination of RNA polymerase III transcription transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation transcription initiation at RNA polymerase III promoter transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription elongation by RNA polymerase I transcription initiation at RNA polymerase I promoter	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I complex nuclear protein-containing complex transferase complex catalytic complex transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex RNA polymerase II, holoenzyme nucleoplasm RNA polymerase II, core complex RNA polymerase III complex cytoplasm peroxisome microbody
BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], UB [auth EM]	DNA-directed RNA polymerase I subunit RPA49	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis cellular component organization regulation of cellular component size biological regulation regulation of biological quality regulation of cell size regulation of anatomical structure size transcription preinitiation complex assembly RNA polymerase I preinitiation complex assembly protein-DNA complex organization transcription initiation at RNA polymerase I promoter cellular component assembly protein-containing complex assembly protein-containing complex organization protein-DNA complex assembly DNA-templated transcription initiation transcription elongation by RNA polymerase I DNA-templated transcription elongation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I complex nuclear protein-containing complex transferase complex catalytic complex transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex
CA [auth BN], GB [auth DN], KC [auth FN], N [auth AN], RA [auth CN], CA [auth BN], GB [auth DN], KC [auth FN], N [auth AN], RA [auth CN], VB [auth EN]	DNA-directed RNA polymerase I subunit RPA34	DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription transcription elongation by RNA polymerase I DNA-templated transcription elongation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I complex nuclear protein-containing complex transferase complex catalytic complex transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	DNA-directed RNA polymerase I subunit RPA135	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding cation binding ion binding metal ion binding	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription elongation by RNA polymerase I DNA-templated transcription elongation transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	DNA-directed RNA polymerases I, II, and III subunit RPABC1	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process transcription by RNA polymerase III tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III ncRNA metabolic process transcription by RNA polymerase I rRNA transcription rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I DNA-templated transcription termination termination of RNA polymerase I transcription RNA-templated transcription termination of RNA polymerase III transcription transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation transcription initiation at RNA polymerase III promoter transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription elongation by RNA polymerase I transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase II, holoenzyme nucleoplasm RNA polymerase II, core complex RNA polymerase III complex
AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], W [auth BH]	DNA-directed RNA polymerases I, II, and III subunit RPABC3	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription RNA-templated transcription termination of RNA polymerase III transcription transcription by RNA polymerase III transcription by RNA polymerase II transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation transcription initiation at RNA polymerase III promoter cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription elongation by RNA polymerase I tRNA metabolic process tRNA transcription tRNA transcription by RNA polymerase III transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen RNA polymerase II, holoenzyme nucleoplasm RNA polymerase II, core complex RNA polymerase III complex
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	DNA-directed RNA polymerase I subunit RPA12	binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transcription factor binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase I activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process metabolic process cellular process macromolecule metabolic process DNA-templated transcription termination termination of RNA polymerase I transcription cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process transcription elongation by RNA polymerase I DNA-templated transcription elongation transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle non-membrane-bounded organelle catalytic complex intracellular membrane-bounded organelle cellular anatomical entity nucleolus transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle intracellular non-membrane-bounded organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Domain
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR022842	DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1	Family
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR033901	DNA-directed RNA polymerases I and III subunit AC40	Family
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	Conserved Site
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR036603	RNA polymerase, RBP11-like subunit	Homologous Superfamily
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR011262	DNA-directed RNA polymerase, insert domain	Domain
C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], C [auth AC], GA [auth CC], KB [auth EC], R [auth BC], VA [auth DC], ZB [auth FC]	IPR036643	DNA-directed RNA polymerase, insert domain superfamily	Homologous Superfamily
AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], AC [auth FD], D [auth AD], HA [auth CD], LB [auth ED], S [auth BD], WA [auth DD]	IPR013239	RNA polymerase I, subunit Rpa14, fungi	Family
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	IPR028363	DNA-directed RNA polymerase, subunit RPB6	Family
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	IPR006111	Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit	Family
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	Conserved Site
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	IPR006110	RNA polymerase, subunit omega/Rpo6/RPB6	Family
CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], CC [auth FF], F [auth AF], JA [auth CF], NB [auth EF], U [auth BF], YA [auth DF]	IPR036161	RPB6/omega subunit-like superfamily	Homologous Superfamily
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR045113	RNA polymerase subunit Rpb7-like	Family
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR005576	RNA polymerase Rpb7-like , N-terminal	Domain
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	Homologous Superfamily
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR041178	RPA43, OB domain	Domain
DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], DA [auth BO], DC [auth FG], G [auth AG], HB [auth DO], KA [auth CG], LC [auth FO], O [auth AO], OB [auth EG], SA [auth CO], V [auth BG], WB [auth EO], ZA [auth DG]	IPR041901	Rpa43, N-terminal ribonucleoprotein (RNP) domain	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR007081	RNA polymerase Rpb1, domain 5	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR047107	DNA-directed RNA pol I, largest subunit, C-terminal domain	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR007083	RNA polymerase Rpb1, domain 4	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR006592	RNA polymerase, N-terminal	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR007066	RNA polymerase Rpb1, domain 3	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR000722	RNA polymerase, alpha subunit	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR015699	DNA-directed RNA pol I, largest subunit, N-terminal domain	Domain
A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], A [auth AA], EA [auth CA], IB [auth EA], P [auth BA], TA [auth DA], XB [auth FA]	IPR007080	RNA polymerase Rpb1, domain 1	Domain
CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], Y [auth BJ]	IPR020789	RNA polymerases, subunit N, zinc binding site	Binding Site
CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], Y [auth BJ]	IPR000268	DNA-directed RNA polymerase subunit RPABC5/Rpb10	Family
CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], CB [auth DJ], GC [auth FJ], J [auth AJ], NA [auth CJ], RB [auth EJ], Y [auth BJ]	IPR023580	RNA polymerase subunit RPB10	Homologous Superfamily
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	Domain
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	IPR022905	DNA-directed RNA polymerase subunit Rpo11-like	Family
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	IPR033898	DNA-directed RNA polymerases I and III subunit AC19	Family
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	IPR036603	RNA polymerase, RBP11-like subunit	Homologous Superfamily
DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], DB [auth DK], HC [auth FK], K [auth AK], OA [auth CK], SB [auth EK], Z [auth BK]	IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	Conserved Site
AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], TB [auth EL]	IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	Family
AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], TB [auth EL]	IPR029040	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	Homologous Superfamily
AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], AA [auth BL], EB [auth DL], IC [auth FL], L [auth AL], PA [auth CL], TB [auth EL]	IPR039747	DNA-directed RNA polymerases I, II, and III subunit RPABC4	Family
BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], BA [auth BM], FB [auth DM], JC [auth FM], M [auth AM], QA [auth CM], UB [auth EM]	IPR009668	RNA polymerase I associated factor, A49-like	Family
CA [auth BN], GB [auth DN], KC [auth FN], N [auth AN], RA [auth CN], CA [auth BN], GB [auth DN], KC [auth FN], N [auth AN], RA [auth CN], VB [auth EN]	IPR013240	DNA-directed RNA polymerase I, subunit RPA34	Family
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007642	RNA polymerase Rpb2, domain 2	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR009674	DNA-directed RNA polymerase I subunit RPA2, domain 4	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007645	RNA polymerase Rpb2, domain 3	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007644	RNA polymerase, beta subunit, protrusion	Domain
B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], B [auth AB], FA [auth CB], JB [auth EB], Q [auth BB], UA [auth DB], YB [auth FB]	IPR007641	RNA polymerase Rpb2, domain 7	Domain
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	Homologous Superfamily
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5	Family
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR035913	RPB5-like RNA polymerase subunit superfamily	Homologous Superfamily
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	Domain
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	Conserved Site
BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], BC [auth FE], E [auth AE], IA [auth CE], MB [auth EE], T [auth BE], XA [auth DE]	IPR005571	RNA polymerase, Rpb5, N-terminal	Domain
AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], W [auth BH]	IPR005570	DNA-directed RNA polymerases I, II, and III subunit RPABC3	Family
AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], AB [auth DH], EC [auth FH], H [auth AH], LA [auth CH], PB [auth EH], W [auth BH]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	IPR034004	Pol I subunit A12, C-terminal zinc ribbon	Domain
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	Family
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	IPR001222	Zinc finger, TFIIS-type	Domain
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	Conserved Site
BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], BB [auth DI], FC [auth FI], I [auth AI], MA [auth CI], QB [auth EI], X [auth BI]	IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	Domain