4YEE | pdb_00004yee

beta2 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclodextrin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4yeeb1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
B	d4yeeb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
D	d4yeed_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
E	d4yeee1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
E	d4yeee2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
G	d4yeeg1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
G	d4yeeg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
H	d4yeeh1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
H	d4yeeh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
J	d4yeej1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
J	d4yeej2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
K	d4yeek_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
N	d4yeen1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
N	d4yeen2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
R	d4yeer1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
R	d4yeer2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
Q	d4yeeq1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
Q	d4yeeq2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
P	d4yeep1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
P	d4yeep2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
O	d4yeeo1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
O	d4yeeo2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
M	d4yeem1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
M	d4yeem2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
L	d4yeel_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
I	d4yeei1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
I	d4yeei2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
F	d4yeef1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
F	d4yeef2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
C	d4yeec1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
C	d4yeec2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
A	d4yeea_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	AMPK-beta glycogen binding domain-like	5'-AMP-activated protein kinase subunit beta-2	Rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Starch-binding domain-like	8083360	3000816	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Flavin_Reduct	e4yeeB1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
D	Flavin_Reduct	e4yeeD1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
E	Flavin_Reduct	e4yeeE1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
G	Flavin_Reduct	e4yeeG1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
H	Flavin_Reduct	e4yeeH1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
J	Flavin_Reduct	e4yeeJ1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
K	Flavin_Reduct	e4yeeK1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
N	Flavin_Reduct	e4yeeN1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
R	Flavin_Reduct	e4yeeR1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
Q	Flavin_Reduct	e4yeeQ1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
P	Flavin_Reduct	e4yeeP1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
O	Flavin_Reduct	e4yeeO1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
M	Flavin_Reduct	e4yeeM1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
L	Flavin_Reduct	e4yeeL1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
I	Flavin_Reduct	e4yeeI1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
F	Flavin_Reduct	e4yeeF1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
C	Flavin_Reduct	e4yeeC1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)
A	Flavin_Reduct	e4yeeA1	A: beta barrels	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
G	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
H	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
J	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
K	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
N	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
R	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
Q	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
P	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
O	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
M	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
L	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
I	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
F	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF16561	Glycogen recognition site of AMP-activated protein kinase (AMPK1_CBM)	Glycogen recognition site of AMP-activated protein kinase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	5'-AMP-activated protein kinase subunit beta-2	protein binding binding kinase binding enzyme binding protein kinase binding	multicellular organismal process regulation of biological process homeostatic process biological regulation positive regulation of biological process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of multicellular organismal process fatty acid metabolic process multicellular organismal process regulation of biological process homeostatic process biological regulation positive regulation of biological process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of multicellular organismal process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus regulation of cellular process signaling signal transduction cell communication	cell periphery cellular anatomical structure apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane intracellular anatomical structure cytoplasm protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex cell periphery cellular anatomical structure apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane intracellular anatomical structure cytoplasm protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex intracellular protein-containing complex nucleotide-activated protein kinase complex cAMP-dependent protein kinase complex serine/threonine protein kinase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR032640	AMP-activated protein kinase, glycogen-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR037256	ASC domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR006828	Association with the SNF1 complex (ASC) domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR050827	CRP1/MDG1 DNA-binding & kinase subunit	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.