4YDP | pdb_00004ydp

Crystal structure of N-terminal PDZ domain of ZASP in complex with myotilin C-terminal peptide.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4ydpb_	All beta proteins	PDZ domain-like	PDZ domain-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4ydpa_	All beta proteins	PDZ domain-like	PDZ domain-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PDZ domain-like	8040621	3000388	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PDZ domain-like	8040621	3000388	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Trypsin	e4ydpB1	A: alpha bundles	X: Spectrin repeat-like	H: EF-hand-related	T: EF-hand	F: Trypsin	ECOD (develop294)
A	Trypsin	e4ydpA1	A: alpha bundles	X: Spectrin repeat-like	H: EF-hand-related	T: EF-hand	F: Trypsin	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	LIM domain-binding protein 3	cytoskeletal protein binding actin binding protein binding binding alpha-actinin binding actinin binding muscle alpha-actinin binding kinase binding protein kinase C binding enzyme binding protein kinase binding cation binding ion binding metal ion binding cytoskeletal protein binding actin binding protein binding binding alpha-actinin binding actinin binding muscle alpha-actinin binding kinase binding protein kinase C binding enzyme binding protein kinase binding cation binding ion binding metal ion binding small molecule binding	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development muscle structure development cellular component organization organelle organization actin cytoskeleton organization actin filament-based process cellular process developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development muscle structure development cellular component organization organelle organization actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization cellular developmental process cellular component assembly involved in morphogenesis cell development membraneless organelle assembly muscle cell differentiation cellular component biogenesis striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation sarcomere organization actomyosin structure organization organelle assembly anatomical structure morphogenesis myofibril assembly anatomical structure formation involved in morphogenesis striated muscle cell differentiation supramolecular fiber organization	cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction cell projection pseudopodium plasma membrane bounded cell projection intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction cell projection pseudopodium plasma membrane bounded cell projection intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex cytoskeleton actin filament bundle actin cytoskeleton actomyosin stress fiber contractile actin filament bundle perinuclear region of cytoplasm polymeric cytoskeletal fiber protein-containing complex actin filament filamentous actin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR006643	Zasp-like motif	Domain
A, B	IPR050604	PDZ and LIM domain-containing	Family
A, B	IPR031847	PDZ and LIM domain protein 1-4/Zasp-like, middle domain	Domain
A, B	IPR036034	PDZ superfamily	Homologous Superfamily
A, B	IPR001478	PDZ domain	Domain
A, B	IPR001781	Zinc finger, LIM-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O75112	left ventricular noncompaction myopathy myofibrillar myopathy dilated cardiomyopathy myofibrillar myopathy 4 dilated cardiomyopathy 1C arrhythmogenic right ventricular cardiomyopathy cardiomyopathy lung cancer malignant glioma muscular disease Pick disease atypical teratoid rhabdoid tumor psoriasis CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 24 left ventricular noncompaction myopathy myofibrillar myopathy dilated cardiomyopathy myofibrillar myopathy 4 dilated cardiomyopathy 1C arrhythmogenic right ventricular cardiomyopathy cardiomyopathy lung cancer malignant glioma muscular disease Pick disease atypical teratoid rhabdoid tumor psoriasis CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 24 distal myopathy glioblastoma malignant colon neoplasm medulloblastoma oligodendroglioma arthrogryposis pilocytic astrocytoma subependymal giant cell astrocytoma Charcot-Marie-Tooth disease familial dilated cardiomyopathy hypertrophic cardiomyopathy malignant ependymoma muscle tissue disease ovarian cancer astrocytic tumor primitive neuroectodermal tumor familial isolated dilated cardiomyopathy intellectual disability

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.