4XQJ | pdb_00004xqj

Crystal structure of AgrA LytTR domain in complex with promoters

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2 FamilyLytTr domain-like 8045871 4004734 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyChromo domain-like 8092313 3000161 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyChromo domain-like 8092314 3000161 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyChromo domain-like 8092314 3000161 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyChromo domain-like 8092313 3000161 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DBAHe4xqjD1 A: alpha bundlesX: Alpha-beta plaitsH: SH3T: SH3F: BAHECOD (develop294)
ABAHe4xqjA1 A: alpha bundlesX: Alpha-beta plaitsH: SH3T: SH3F: BAHECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)
A2.40.50.1020 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) LytTr DNA-binding domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F
DNA (5'-D(*AP*AP*TP*TP*CP*TP*TP*AP*AP*CP*TP*GP*T)-3')---
B, E
DNA (5'-D(P*AP*CP*AP*GP*TP*TP*AP*AP*GP*AP*AP*T)-3')---
A, D
Accessory gene regulator A -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, D
IPR011006CheY-like superfamilyHomologous Superfamily
A, D
IPR001789Signal transduction response regulator, receiver domainDomain
A, D
IPR007492LytTR DNA-binding domainDomain
A, D
IPR046947Transcriptional regulatory protein LytR-likeFamily