4XA9 | pdb_00004xa9

Crystal structure of the complex between the N-terminal domain of RavJ and LegL1 from Legionella pneumophila str. Philadelphia

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth h]	RuBisCO_large	e4xa9h1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: RuBisCO_large	ECOD (v294.1)
N [auth g]	Beta-Casp	e4xa9g1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
L [auth f]	Beta-Casp	e4xa9f1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
J [auth e]	Beta-Casp	e4xa9e1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
H [auth d]	Beta-Casp	e4xa9d1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
F [auth c]	Beta-Casp	e4xa9c1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
D [auth b]	Beta-Casp	e4xa9b1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
B [auth a]	Beta-Casp	e4xa9a1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related	T: Glycoside hydrolase family 127 middle domain-related	F: Beta-Casp	ECOD (v294.1)
O [auth H]	Arm	e4xa9H1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
M [auth G]	Ribosomal_L9_N	e4xa9G1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ribosomal_L9_N	ECOD (v294.1)
K [auth F]	Arm	e4xa9F1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
I [auth E]	Arm	e4xa9E1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
G [auth D]	Arm	e4xa9D1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
E [auth C]	Arm	e4xa9C1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
C [auth B]	Arm	e4xa9B1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)
A	Arm	e4xa9A1	A: a/b three-layered sandwiches	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Arm	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	PF22469	RavJ, Peptidase domain (RavJ_Peptidase)	RavJ, Peptidase domain	This entry represents the N-terminal cysteine proteinase domain of RavJ from Legionella pneumophila [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h]	Uncharacterized protein	-	symbiont-mediated perturbation of host actin cytoskeleton symbiont-mediated disruption of host anatomical structure symbiont-mediated perturbation of host actin cytoskeleton via actin filament reorganization biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host cytoskeleton disruption of anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical structure	-
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	Gala protein type 1, 3 or 4	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h]	IPR041234	RavJ-like, C-terminal domain	Domain
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h]	IPR055059	RavJ, peptidase domain	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR001611	Leucine-rich repeat	Repeat
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR027038	Ran GTPase-activating protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.