4X3H | pdb_00004x3h

CRYSTAL STRUCTURE OF ARC N-LOBE COMPLEXED WITH STARGAZIN PEPTIDE

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AV-sete4x3hA1 A: alpha bundlesX: OB-foldH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: V-setECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21395Activity-regulated cytoskeleton-associated protein, capsid domain (Arc_capsid_dom)Activity-regulated cytoskeleton-associated protein, capsid domainThis domain is found in Activity-regulated cytoskeleton-associated protein from humans (Arc), a master regulator of synaptic plasticity that promotes endocytosis of AMPA receptors and a postsynaptic mediator of activity-dependent synapse elimination ...This domain is found in Activity-regulated cytoskeleton-associated protein from humans (Arc), a master regulator of synaptic plasticity that promotes endocytosis of AMPA receptors and a postsynaptic mediator of activity-dependent synapse elimination in the developing cerebellum. This protein is associated with cognitive diseases. This Gag-like protein has the topology of a retroviral Gag protein, with a central capsid domain (this entry) with two globular subdomains, the N-lobe and the C-lobe, consisting of four and five alpha-helices, connected by a short non-helical segment [1-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-2 SUBUNIT
Activity-regulated cytoskeleton-associated protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR051072Voltage-dependent calcium channel gamma subunitFamily
IPR004031PMP-22/EMP/MP20/ClaudinFamily
IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
IPR008368Voltage-dependent calcium channel, gamma subunitFamily
IPR040814Activity-regulated cytoskeleton-associated protein, C-lobeDomain
IPR023263Activity-regulated cytoskeleton-associated proteinFamily
IPR045557Activity-regulated cytoskeleton-associated protein, N-terminal domainDomain
IPR048965Activity-regulated cytoskeleton-associated protein, N-lobeDomain