4WYK
Structure of the LRR and NTF2-like domains of NXF1 complexed with NXT1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | L domain-like | 8038331 | 3001010 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | NTF2-like | 8037085 | 3000472 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | NTF2-like | 8037085 | 3000472 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | L domain-like | 8038331 | 3001010 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | NTF2-like | 8037084 | 3000472 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | NTF2-like | 8037084 | 3000472 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4wykA2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22602 | e4wykA1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF22602 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4wykC2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF22602 | e4wykC1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF22602 | ECOD (1.6) |
D | PF02136 | e4wykD1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
B | PF02136 | e4wykB1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
A | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
C | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
C | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
D | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02136 | Nuclear transport factor 2 (NTF2) domain (NTF2) | Nuclear transport factor 2 (NTF2) domain | This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. | Domain | |
PF02136 | Nuclear transport factor 2 (NTF2) domain (NTF2) | Nuclear transport factor 2 (NTF2) domain | This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030217 | Nuclear RNA export factor | Family | |
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR015245 | Nuclear RNA export factor Tap, RNA-binding domain | Domain | |
IPR005637 | TAP C-terminal (TAP-C) domain | Domain | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR018222 | Nuclear transport factor 2, eukaryote | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR002075 | Nuclear transport factor 2 domain | Domain | |
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR045875 | Nuclear transport factor 2 | Family | |
IPR018222 | Nuclear transport factor 2, eukaryote | Domain | |
IPR002075 | Nuclear transport factor 2 domain | Domain |