Crystal structure of the Type-I signal peptidase from Staphylococcus aureus (SpsB) in complex with a substrate peptide (pep1).
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Peptidase_S24_1 | e4wvhA4 | A: beta barrels | X: SH3 | H: LexA/Signal peptidase (From Topology) | T: LexA/Signal peptidase | F: Peptidase_S24_1 | ECOD (1.6) |
| A | SBP_bac_1_C | e4wvhA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
| A | SBP_bac_1_N_1 | e4wvhA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF10502 | Signal peptidase, peptidase S26 (Peptidase_S26) | Signal peptidase, peptidase S26 | This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| B [auth C] | substrate peptide (pep1) | - | - | - |
| Maltose-binding periplasmic protein,Signal peptidase IB |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR019758 | Peptidase S26A, signal peptidase I, conserved site | Conserved Site | |
| IPR019533 | Peptidase S26 | Domain | |
| IPR019757 | Peptidase S26A, signal peptidase I, lysine active site | Active Site | |
| IPR036286 | LexA/Signal peptidase-like superfamily | Homologous Superfamily | |
| IPR000223 | Peptidase S26A, signal peptidase I | Family | |
| IPR019756 | Peptidase S26A, signal peptidase I, serine active site | Active Site |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | MONOTOPIC MEMBRANE PROTEINS | Peptidases | SpsB Signal Peptidase (SPase), apoprotein |














