4W8K
Crystal structure of a putative Cas1 enzyme from Vibrio phage ICP1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4w8ka_ | Multi-domain proteins (alpha and beta) | CRISPR associated protein Cas1-like | CRISPR associated protein Cas1-like | automated matches | automated matches | (Vibrio phage ICP1_2005_A ) [TaxId: 979528 ], | SCOPe (2.08) |
B | d4w8kb1 | Multi-domain proteins (alpha and beta) | CRISPR associated protein Cas1-like | CRISPR associated protein Cas1-like | automated matches | automated matches | (Vibrio phage ICP1_2005_A ) [TaxId: 979528 ], | SCOPe (2.08) |
B | d4w8kb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Vibrio phage ICP1_2005_A ) [TaxId: 979528 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | CRISPR associated protein Cas1 | 8049660 | 4006578 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CRISPR associated protein Cas1 | 8053184 | 3002164 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | CRISPR associated protein Cas1 | 8053184 | 3002164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01867 | e4w8kA1 | A: alpha complex topology | X: Cas1 (From Topology) | H: Cas1 (From Topology) | T: Cas1 | F: PF01867 | ECOD (1.6) |
B | PF01867 | e4w8kB1 | A: alpha complex topology | X: Cas1 (From Topology) | H: Cas1 (From Topology) | T: Cas1 | F: PF01867 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.100.10.20 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (4.3.0) |
A | 1.20.120.920 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CRISPR-associated endonuclease Cas1, C-terminal domain | CATH (4.3.0) |
B | 3.100.10.20 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (4.3.0) |
B | 1.20.120.920 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CRISPR-associated endonuclease Cas1, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01867 | CRISPR associated protein Cas1 (Cas_Cas1) | CRISPR associated protein Cas1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002729 | CRISPR-associated protein Cas1 | Family | |
IPR042206 | CRISPR-associated endonuclease Cas1, C-terminal domain | Homologous Superfamily | |
IPR042211 | CRISPR-associated endonuclease Cas1, N-terminal domain | Homologous Superfamily | |
IPR019857 | CRISPR-associated protein Cas1, YPEST subtype | Family |