Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E [auth AE] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| J [auth AJ] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| O [auth AO] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| P [auth AP] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| R [auth AR] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8100290 | 3001284 | SCOP2B (2022-06-29) |
| T [auth AT] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| AA [auth BC] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065348 | 3001911 | SCOP2B (2022-06-29) |
| EA [auth BG] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| JA [auth BL] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| MA [auth BO] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| NA [auth BP] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| OA [auth BQ] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| PA [auth BR] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| VA [auth BX] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| YA [auth B0] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| AB [auth B2] | SCOP2B Superfamily | L28p-like | 8032740 | 3001966 | SCOP2B (2022-06-29) |
| EB [auth B6] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| I [auth AI] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| G [auth AG] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| FB [auth B7] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| CB [auth B4] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| BB [auth B3] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| ZA [auth B1] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| XA [auth BZ] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| WA [auth BY] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| UA [auth BW] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| TA [auth BV] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| SA [auth BU] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| RA [auth BT] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| QA [auth BS] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| LA [auth BN] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| KA [auth BM] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| IA [auth BK] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| IA [auth BK] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| HA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L10-like | 8079773 | 3000665 | SCOP2B (2022-06-29) |
| GA [auth BI] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| GA [auth BI] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| FA [auth BH] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| FA [auth BH] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| DA [auth BF] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| CA [auth BE] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| BA [auth BD] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| BA [auth BD] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| X [auth AX] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| V [auth AV] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| S [auth AS] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| Q [auth AQ] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| N [auth AN] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| M [auth AM] | SCOP2 Family | Ribosomal protein S10 | 8102680 | 4001240 | SCOP2 (2022-06-29) |
| M [auth AM] | SCOP2 Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2 (2022-06-29) |
| L [auth AL] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| K [auth AK] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth AE] | FlaF_Ig-like | e4v6rAE1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| H [auth AH] | TTL, ATPgrasp_YheCD | e4v6rAH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| J [auth AJ] | Peptidase_M99_C | e4v6rAJ1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Peptidase_M99_C | ECOD (v294.1) |
| O [auth AO] | TTL, ATPgrasp_YheCD | e4v6rAO1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| P [auth AP] | Cellulase | e4v6rAP1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| R [auth AR] | TTL, ATPgrasp_YheCD | e4v6rAR1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| T [auth AT] | Cellulase | e4v6rAT1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| U [auth AU] | TTL, ATPgrasp_YheCD | e4v6rAU1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| AA [auth BC] | TTL, ATPgrasp_YheCD | e4v6rBC1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| EA [auth BG] | TTL, ATPgrasp_YheCD | e4v6rBG1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| JA [auth BL] | TTL, ATPgrasp_YheCD | e4v6rBL1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| MA [auth BO] | Ribosomal_L19 | e4v6rBO1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| NA [auth BP] | TTL, ATPgrasp_YheCD | e4v6rBP1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| OA [auth BQ] | TTL, ATPgrasp_YheCD | e4v6rBQ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| PA [auth BR] | Ribosomal_L19 | e4v6rBR1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| VA [auth BX] | TTL, ATPgrasp_YheCD | e4v6rBX1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| YA [auth B0] | TTL, ATPgrasp_YheCD | e4v6rB01 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| AB [auth B2] | TTL, ATPgrasp_YheCD | e4v6rB21 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| EB [auth B6] | TTL, ATPgrasp_YheCD | e4v6rB61 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| I [auth AI] | TTL, ATPgrasp_YheCD | e4v6rAI1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| G [auth AG] | FlaF_Ig-like | e4v6rAG1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| F [auth AF] | Peptidase_M99_C | e4v6rAF1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Peptidase_M99_C | ECOD (v294.1) |
| FB [auth B7] | TTL, ATPgrasp_YheCD | e4v6rB71 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| DB [auth B5] | TTL, ATPgrasp_YheCD | e4v6rB51 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| CB [auth B4] | PemK_toxin | e4v6rB41 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| BB [auth B3] | TTL, ATPgrasp_YheCD | e4v6rB31 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| ZA [auth B1] | TTL, ATPgrasp_YheCD | e4v6rB11 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| XA [auth BZ] | TTL, ATPgrasp_YheCD | e4v6rBZ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| WA [auth BY] | TTL, ATPgrasp_YheCD | e4v6rBY1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| UA [auth BW] | TTL, ATPgrasp_YheCD | e4v6rBW1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| TA [auth BV] | TTL, ATPgrasp_YheCD | e4v6rBV1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| SA [auth BU] | TTL, ATPgrasp_YheCD | e4v6rBU1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| RA [auth BT] | TTL, ATPgrasp_YheCD | e4v6rBT1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| QA [auth BS] | PemK_toxin | e4v6rBS1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| LA [auth BN] | PemK_toxin | e4v6rBN1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| KA [auth BM] | TTL, ATPgrasp_YheCD | e4v6rBM1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| IA [auth BK] | TTL, ATPgrasp_YheCD | e4v6rBK1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| HA [auth BJ] | TTL, ATPgrasp_YheCD | e4v6rBJ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| GA [auth BI] | TTL, ATPgrasp_YheCD | e4v6rBI2 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| GA [auth BI] | PemK_toxin | e4v6rBI3 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| FA [auth BH] | TTL, ATPgrasp_YheCD | e4v6rBH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| DA [auth BF] | TTL, ATPgrasp_YheCD | e4v6rBF1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| CA [auth BE] | PemK_toxin | e4v6rBE1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| BA [auth BD] | TTL, ATPgrasp_YheCD | e4v6rBD1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| X [auth AX] | TTL, ATPgrasp_YheCD | e4v6rAX1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| W [auth AW] | TTL, ATPgrasp_YheCD | e4v6rAW1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| V [auth AV] | Cellulase | e4v6rAV1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.1) |
| S [auth AS] | TTL, ATPgrasp_YheCD | e4v6rAS1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| Q [auth AQ] | TTL, ATPgrasp_YheCD | e4v6rAQ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| N [auth AN] | TTL, ATPgrasp_YheCD | e4v6rAN1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| M [auth AM] | TTL, ATPgrasp_YheCD | e4v6rAM1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| L [auth AL] | FlaF_Ig-like | e4v6rAL1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
| K [auth AK] | TTL, ATPgrasp_YheCD | e4v6rAK1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E [auth AE] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| H [auth AH] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| H [auth AH] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| J [auth AJ] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| O [auth AO] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| P [auth AP] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| R [auth AR] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| T [auth AT] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| U [auth AU] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| AA [auth BC] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| EA [auth BG] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| EA [auth BG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| JA [auth BL] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| MA [auth BO] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| NA [auth BP] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| OA [auth BQ] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| PA [auth BR] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| VA [auth BX] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| YA [auth B0] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| AB [auth B2] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| EB [auth B6] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| I [auth AI] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| G [auth AG] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| G [auth AG] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| F [auth AF] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| F [auth AF] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| FB [auth B7] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| DB [auth B5] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| CB [auth B4] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| BB [auth B3] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| ZA [auth B1] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| XA [auth BZ] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| WA [auth BY] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| UA [auth BW] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| UA [auth BW] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| TA [auth BV] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| SA [auth BU] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| RA [auth BT] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| QA [auth BS] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| LA [auth BN] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| KA [auth BM] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| IA [auth BK] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| IA [auth BK] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| HA [auth BJ] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| GA [auth BI] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| GA [auth BI] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| FA [auth BH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| DA [auth BF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| CA [auth BE] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| BA [auth BD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| BA [auth BD] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| X [auth AX] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| W [auth AW] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| V [auth AV] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| S [auth AS] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| Q [auth AQ] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| N [auth AN] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| M [auth AM] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| L [auth AL] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| K [auth AK] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain |














