4V5O
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
JA [auth B1] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063434 | 3000135 | SCOP2B (2022-06-29) |
A [auth A1] | SCOP2 Family | Cold shock DNA-binding domain-like | 8063433 | 4001909 | SCOP2 (2022-06-29) |
A [auth A1] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8063434 | 3000135 | SCOP2 (2022-06-29) |
B [auth A2] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053076 | 3000433 | SCOP2B (2022-06-29) |
KA [auth B2] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053076 | 3000433 | SCOP2B (2022-06-29) |
D [auth A4] | SCOP2 Family | Ribosomal S3Ae | 8048437 | 4006095 | SCOP2 (2022-06-29) |
D [auth A4] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053217 | 3002166 | SCOP2 (2022-06-29) |
MA [auth B4] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053217 | 3002166 | SCOP2B (2022-06-29) |
E [auth A5] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053151 | 3000068 | SCOP2B (2022-06-29) |
NA [auth B5] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053151 | 3000068 | SCOP2B (2022-06-29) |
G [auth A7] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055717 | 3000034 | SCOP2B (2022-06-29) |
PA [auth B7] | SCOP2 Family | eS10-like | 8051614 | 4007434 | SCOP2 (2022-06-29) |
PA [auth B7] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8055717 | 3000034 | SCOP2 (2022-06-29) |
P [auth AG] | SCOP2 Family | Ribosomal protein S7 | 8099235 | 4001112 | SCOP2 (2022-06-29) |
P [auth AG] | SCOP2 Superfamily | Ribosomal protein S7 | 8099236 | 3000799 | SCOP2 (2022-06-29) |
YA [auth BG] | SCOP2B Superfamily | Ribosomal protein S7 | 8099236 | 3000799 | SCOP2B (2022-06-29) |
ZA [auth BH] | SCOP2B Superfamily | Ribosomal protein S8 | 8099244 | 3000709 | SCOP2B (2022-06-29) |
Q [auth AH] | SCOP2 Family | Ribosomal protein S8 | 8099243 | 4002027 | SCOP2 (2022-06-29) |
Q [auth AH] | SCOP2 Superfamily | Ribosomal protein S8 | 8099244 | 3000709 | SCOP2 (2022-06-29) |
BB [auth BJ] | SCOP2 Family | Ribosomal protein S10 | 8099231 | 4001240 | SCOP2 (2022-06-29) |
BB [auth BJ] | SCOP2 Superfamily | Ribosomal protein S10 | 8099232 | 3001336 | SCOP2 (2022-06-29) |
S [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8099232 | 3001336 | SCOP2B (2022-06-29) |
FB [auth BN] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047584 | 4003647 | SCOP2 (2022-06-29) |
FB [auth BN] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052590 | 3000068 | SCOP2 (2022-06-29) |
W [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052590 | 3000068 | SCOP2B (2022-06-29) |
Z [auth AQ] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052733 | 3002138 | SCOP2B (2022-06-29) |
Z [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052735 | 3000135 | SCOP2B (2022-06-29) |
IB [auth BQ] | SCOP2 Family | Cold shock DNA-binding domain-like | 8052734 | 4001909 | SCOP2 (2022-06-29) |
IB [auth BQ] | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045078 | 4004290 | SCOP2 (2022-06-29) |
IB [auth BQ] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052735 | 3000135 | SCOP2 (2022-06-29) |
IB [auth BQ] | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052733 | 3002138 | SCOP2 (2022-06-29) |
AA [auth AR] | SCOP2 Family | WD40-repeat | 8101608 | 4002744 | SCOP2 (2022-06-29) |
AA [auth AR] | SCOP2 Superfamily | WD40 repeat-like | 8101609 | 3001694 | SCOP2 (2022-06-29) |
JB [auth BR] | SCOP2B Superfamily | WD40 repeat-like | 8101609 | 3001694 | SCOP2B (2022-06-29) |
DA [auth AU] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8099233 | 4001513 | SCOP2 (2022-06-29) |
DA [auth AU] | SCOP2 Superfamily | L30e-like | 8099234 | 3001739 | SCOP2 (2022-06-29) |
MB [auth BU] | SCOP2B Superfamily | L30e-like | 8099234 | 3001739 | SCOP2B (2022-06-29) |
FA [auth AW] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052772 | 3000334 | SCOP2B (2022-06-29) |
FA [auth AW] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052771 | 3000135 | SCOP2B (2022-06-29) |
FA [auth AW] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052770 | 3001473 | SCOP2B (2022-06-29) |
OB [auth BW] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050331 | 4006847 | SCOP2 (2022-06-29) |
OB [auth BW] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048393 | 4001909 | SCOP2 (2022-06-29) |
OB [auth BW] | SCOP2 Family | Ribosomal protein S4e C-terminal KOW domain-like | 8044901 | 4004197 | SCOP2 (2022-06-29) |
OB [auth BW] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052770 | 3001473 | SCOP2 (2022-06-29) |
OB [auth BW] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052771 | 3000135 | SCOP2 (2022-06-29) |
OB [auth BW] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052772 | 3000334 | SCOP2 (2022-06-29) |
QB [auth BY] | SCOP2 Family | Ribosomal protein S6e | 8048564 | 4006143 | SCOP2 (2022-06-29) |
QB [auth BY] | SCOP2 Superfamily | GS N-terminal domain-like | 8053166 | 3000408 | SCOP2 (2022-06-29) |
HA [auth AY] | SCOP2B Superfamily | GS N-terminal domain-like | 8053166 | 3000408 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
JA [auth B1] | PF01200 | e4v5oB11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
A [auth A1] | PF01200 | e4v5oA11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
B [auth A2] | PF01201 | e4v5oA21 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
KA [auth B2] | PF01201 | e4v5oB21 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
C [auth A3] | PF01251 | e4v5oA31 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Ribosome-binding factor A (RbfA)-related (From Topology) | T: Ribosome-binding factor A (RbfA)-related | F: PF01251 | ECOD (1.6) |
LA [auth B3] | PF01251 | e4v5oB31 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Ribosome-binding factor A (RbfA)-related (From Topology) | T: Ribosome-binding factor A (RbfA)-related | F: PF01251 | ECOD (1.6) |
D [auth A4] | PF01015 | e4v5oA42 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
D [auth A4] | PF01015 | e4v5oA41 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
MA [auth B4] | PF01015 | e4v5oB42 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
MA [auth B4] | PF01015 | e4v5oB41 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
E [auth A5] | PF01283 | e4v5oA51 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
NA [auth B5] | PF01283 | e4v5oB51 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
F [auth A6] | PF01667 | e4v5oA61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
OA [auth B6] | PF01667 | e4v5oB61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
G [auth A7] | PF03501 | e4v5oA71 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
PA [auth B7] | PF03501 | e4v5oB71 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
H [auth A8] | PF03297 | e4v5oA81 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
QA [auth B8] | PF03297 | e4v5oB81 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
I [auth A9] | PF01599 | e4v5oA91 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
RA [auth B9] | PF01599 | e4v5oB91 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
TA [auth BB] | PF00318 | e4v5oBB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
K [auth AB] | PF00318 | e4v5oAB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
L [auth AC] | PF00189 | e4v5oAC2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
L [auth AC] | PF07650 | e4v5oAC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
UA [auth BC] | PF00189 | e4v5oBC2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
UA [auth BC] | PF07650 | e4v5oBC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
M [auth AD] | PF00163,PF01479 | e4v5oAD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
VA [auth BD] | PF00163,PF01479 | e4v5oBD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
N [auth AE] | PF03719 | e4v5oAE4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
N [auth AE] | PF00333 | e4v5oAE3 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
N [auth AE] | PF00333 | e4v5oAE1 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
WA [auth BE] | PF03719 | e4v5oBE3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
WA [auth BE] | PF00333 | e4v5oBE4 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
WA [auth BE] | PF00333 | e4v5oBE2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
O [auth AF] | PF01253 | e4v5oAF1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: eIF1-like (From Topology) | T: eIF1-like | F: PF01253 | ECOD (1.6) |
XA [auth BF] | PF01253 | e4v5oBF1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: eIF1-like (From Topology) | T: eIF1-like | F: PF01253 | ECOD (1.6) |
P [auth AG] | PF00177 | e4v5oAG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
YA [auth BG] | PF00177 | e4v5oBG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
ZA [auth BH] | PF00410 | e4v5oBH1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
ZA [auth BH] | PF00410 | e4v5oBH2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
Q [auth AH] | PF00410 | e4v5oAH1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
Q [auth AH] | PF00410 | e4v5oAH2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
AB [auth BI] | PF00380 | e4v5oBI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
R [auth AI] | PF00380 | e4v5oAI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
BB [auth BJ] | PF00338 | e4v5oBJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
S [auth AJ] | PF00338 | e4v5oAJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
CB [auth BK] | PF00411 | e4v5oBK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
T [auth AK] | PF00411 | e4v5oAK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
DB [auth BL] | PF00164 | e4v5oBL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
U [auth AL] | PF00164 | e4v5oAL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
EB [auth BM] | PF00416 | e4v5oBM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
V [auth AM] | PF00416 | e4v5oAM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
FB [auth BN] | PF00253 | e4v5oBN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
W [auth AN] | PF00253 | e4v5oAN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
GB [auth BO] | PF08069 | e4v5oBO1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
GB [auth BO] | PF00312 | e4v5oBO2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
X [auth AO] | PF08069 | e4v5oAO1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
X [auth AO] | PF00312 | e4v5oAO2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
HB [auth BP] | PF01282 | e4v5oBP1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
Y [auth AP] | PF01282 | e4v5oAP1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
Z [auth AQ] | PF00366,PF16205 | e4v5oAQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
IB [auth BQ] | PF00366,PF16205 | e4v5oBQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
AA [auth AR] | PF00400 | e4v5oAR1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
JB [auth BR] | PF00400 | e4v5oBR1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
BA [auth AS] | PF00203 | e4v5oAS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
KB [auth BS] | PF00203 | e4v5oBS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
CA [auth AT] | PF01090 | e4v5oAT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
LB [auth BT] | PF01090 | e4v5oBT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
DA [auth AU] | PF01248 | e4v5oAU1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
MB [auth BU] | PF01248 | e4v5oBU1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
EA [auth AV] | PF00833 | e4v5oAV1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
NB [auth BV] | PF00833 | e4v5oBV1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
FA [auth AW] | PF00900 | e4v5oAW2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
FA [auth AW] | PF16121 | e4v5oAW3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16121 | ECOD (1.6) |
FA [auth AW] | PF08071 | e4v5oAW1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF08071 | ECOD (1.6) |
OB [auth BW] | PF00900 | e4v5oBW2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
OB [auth BW] | PF16121 | e4v5oBW3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16121 | ECOD (1.6) |
OB [auth BW] | PF08071 | e4v5oBW1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF08071 | ECOD (1.6) |
GA [auth AX] | PF04758 | e4v5oAX1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
PB [auth BX] | PF04758 | e4v5oBX1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
QB [auth BY] | PF01092 | e4v5oBY1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
HA [auth AY] | PF01092 | e4v5oAY1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
IA [auth AZ] | PF01249 | e4v5oAZ1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
RB [auth BZ] | PF01249 | e4v5oBZ1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth A1], JA [auth B1] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
B [auth A2], KA [auth B2] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
D [auth A4], MA [auth B4] | PF01015 | Ribosomal S3Ae family (Ribosomal_S3Ae) | Ribosomal S3Ae family | - | Family |
E [auth A5], NA [auth B5] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
F [auth A6], OA [auth B6] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
G [auth A7], PA [auth B7] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
L [auth AC], UA [auth BC] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
L [auth AC], UA [auth BC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
M [auth AD], VA [auth BD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
M [auth AD], VA [auth BD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
N [auth AE], WA [auth BE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
N [auth AE], WA [auth BE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
P [auth AG], YA [auth BG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
Q [auth AH], ZA [auth BH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
BB [auth BJ], S [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
DB [auth BL], U [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
FB [auth BN], W [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
HB [auth BP], Y [auth AP] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
IB [auth BQ], Z [auth AQ] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
IB [auth BQ], Z [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
AA [auth AR], JB [auth BR] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
DA [auth AU], MB [auth BU] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
FA [auth AW], OB [auth BW] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
FA [auth AW], OB [auth BW] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
FA [auth AW], OB [auth BW] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
HA [auth AY], QB [auth BY] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |