4V3P

The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth Sa]SCOP2 FamilyWD40-repeat8100181 4002744 SCOP2 (2022-06-29)
A [auth Sa]SCOP2 SuperfamilyWD40 repeat-like8100182 3001694 SCOP2 (2022-06-29)
BA [auth SN]SCOP2 FamilyRibosomal protein S14p/S29e8047576 4003647 SCOP2 (2022-06-29)
BA [auth SN]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052575 3000068 SCOP2 (2022-06-29)
JA [auth LA]SCOP2 FamilyRibosomal protein L1p/L10e-like8065345 4002929 SCOP2 (2022-06-29)
JA [auth LA]SCOP2 SuperfamilyRibosomal protein L1p/L10e-like8065346 3001911 SCOP2 (2022-06-29)
LA [auth LE]SCOP2 FamilyRibosomal protein L58073889 4001498 SCOP2 (2022-06-29)
LA [auth LE]SCOP2 SuperfamilyRL5-like8073890 3001709 SCOP2 (2022-06-29)
OA [auth LM]SCOP2B Superfamily50S Ribosomal protein L14-like8072062 3000433 SCOP2B (2022-06-29)
RA [auth LR]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095976 3001045 SCOP2B (2022-06-29)
TA [auth LT]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8100020 3000890 SCOP2B (2022-06-29)
BB [auth Lf]SCOP2B SuperfamilyL30e-like8077493 3001739 SCOP2B (2022-06-29)
GB [auth Lo]SCOP2 Familyribosomal protein l39e8099597 4001518 SCOP2 (2022-06-29)
GB [auth Lo]SCOP2 SuperfamilyRibosomal protein L39e8099598 3001756 SCOP2 (2022-06-29)
LB [auth LG]SCOP2 FamilyRibosomal protein L6e8048636 4006169 SCOP2 (2022-06-29)
LB [auth LG]SCOP2 FamilyRibosomal protein L6e N-terminal domain8053105 4004275 SCOP2 (2022-06-29)
LB [auth LG]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053107 3000334 SCOP2 (2022-06-29)
LB [auth LG]SCOP2 SuperfamilyRibosomal protein L6e N-terminal domain8053106 3002160 SCOP2 (2022-06-29)
RB [auth Li]SCOP2 FamilyRibosomal protein L34e-like8099599 4006193 SCOP2 (2022-06-29)
RB [auth Li]SCOP2 SuperfamilyRibosomal protein L34e-like8099600 3002203 SCOP2 (2022-06-29)
TB [auth Lk]SCOP2B SuperfamilyRibosomal protein L36e8053117 3002161 SCOP2B (2022-06-29)
CC [auth Le]SCOP2 FamilyRibosomal protein L30p/L7e8052936 4001360 SCOP2 (2022-06-29)
CC [auth Le]SCOP2 FamilyRibosomal L30p/L7e protein N-terminal domain-lke8050358 4006854 SCOP2 (2022-06-29)
CC [auth Le]SCOP2 SuperfamilyRibosomal protein L30p/L7e8052938 3001378 SCOP2 (2022-06-29)
CC [auth Le]SCOP2 SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052937 3002152 SCOP2 (2022-06-29)
EC [auth LC]SCOP2 FamilyRibosomal protein L38078348 4002103 SCOP2 (2022-06-29)
EC [auth LC]SCOP2 SuperfamilyTranslational proteins8078349 3000811 SCOP2 (2022-06-29)
HC [auth Lm]SCOP2 FamilyRibosomal protein L37ae8101402 4003704 SCOP2 (2022-06-29)
HC [auth Lm]SCOP2 SuperfamilyZn-binding ribosomal proteins8101403 3001320 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth Sa]ANAPC4_WD40_14e4v3pSa1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_14ECOD (1.6)
J [auth SL]Ribosom_S12_S23e4v3pSL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
K [auth SM]Ribosomal_S13e4v3pSM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
L [auth SO]Ribosomal_S13_N_1e4v3pSO2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_N_1ECOD (1.6)
L [auth SO]Ribosomal_S15_2e4v3pSO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
M [auth SQ]Ribosomal_S17ee4v3pSQ1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
N [auth SP]Ribosomal_S17_1e4v3pSP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
O [auth SS]Ribosomal_S19ee4v3pSS1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
P [auth SR]Ribosomal_S19e4v3pSR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Q [auth SV]Ribosomal_S25e4v3pSV1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
S [auth SY]Ribosomal_S28ee4v3pSY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
B [auth SA]Ribosomal_S2_2e4v3pSA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
T [auth SZ]Ribosomal_S30e4v3pSZ1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
W [auth SU]Ribosomal_S24ee4v3pSU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
X [auth SX]Ribosomal_S27ee4v3pSX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
Y [auth SC]S4e4v3pSC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
AA [auth SH]Ribosomal_S8_N_1e4v3pSH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
AA [auth SH]Ribosomal_S8_C_1e4v3pSH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
BA [auth SN]Ribosomal_S14_2e4v3pSN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
CA [auth ST]Ribosomal_S21ee4v3pST1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
C [auth SB]Ribosomal_S3_Ce4v3pSB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth SB]KH_2_3e4v3pSB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
JA [auth LA]Ribosomal_L1_2nd_1e4v3pLA2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
JA [auth LA]Ribosomal_L1_1st_1e4v3pLA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
KA [auth LB]Ribosomal_L2_1e4v3pLB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
KA [auth LB]Ribosomal_L2_C_2e4v3pLB2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
LA [auth LE]Ribosomal_L5_Ce4v3pLE1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
MA [auth LF]Ribosomal_L6_2e4v3pLF1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
MA [auth LF]Ribosomal_L6e4v3pLF2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
D [auth SD]Ribosomal_S4ee4v3pSD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
D [auth SD]40S_S4_Ce4v3pSD1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
D [auth SD]RS4NTe4v3pSD3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
NA [auth LH]Ribosomal_L7Ae_1e4v3pLH1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
OA [auth LM]Ribosomal_L14e4v3pLM1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
PA [auth LP]Ribosomal_L15ee4v3pLP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
QA [auth LO]Ribosomal_L18e4v3pLO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
RA [auth LR]Ribosomal_L18e4v3pLR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
SA [auth LQ]Ribosomal_L5ee4v3pLQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
TA [auth LT]Ribosomal_L19e_Ne4v3pLT1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
TA [auth LT]Ribosomal_L19e_Ce4v3pLT2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
UA [auth LU]Ribosomal_L21ee4v3pLU1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
VA [auth LV]Ribosomal_L22e4v3pLV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
WA [auth LX]Ribosomal_L23_3e4v3pLX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
E [auth SE]Ribosomal_S5_C_1e4v3pSE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
E [auth SE]Ribosomal_S5_3e4v3pSE4 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
E [auth SE]Ribosomal_S5_2e4v3pSE2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
XA [auth LZ]Ribosomal_L24ee4v3pLZ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
YA [auth LY]Ribosomal_L26e4v3pLY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
BB [auth Lf]Ribosomal_L7Aee4v3pLf1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
CB [auth Lg]Ribosomal_L31ee4v3pLg1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
DB [auth Lh]Ribosomal_L32ee4v3pLh1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
EB [auth Ll]Ribosomal_L37ee4v3pLl1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
FB [auth Ln]Ribosomal_L38ee4v3pLn1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
GB [auth Lo]Ribosomal_L39e4v3pLo1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
F [auth SF]Ribosomal_S7_1e4v3pSF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
HB [auth Lr]Ribosomal_L44e4v3pLr1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
IB [auth Lq]Ribosomal_L41e4v3pLq1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
LB [auth LG]Ribosomal_L6ee4v3pLG1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
NB [auth LN]Ribosomal_L14ee4v3pLN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
OB [auth LS]Ribosomal_L18Ae4v3pLS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
PB [auth LW]Ribosomal_L22ee4v3pLW1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
QB [auth La]Ribosomal_L27ee4v3pLa1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
G [auth SI]Ribosomal_S9e4v3pSI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
RB [auth Li]Ribosomal_L34ee4v3pLi1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
SB [auth Lj]Ribosomal_L35Aee4v3pLj1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
TB [auth Lk]Ribosomal_L36ee4v3pLk1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
UB [auth Lp]Ribosomal_L40ee4v3pLp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
WB [auth LJ]Ribosomal_L11e4v3pLJ2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
WB [auth LJ]Ribosomal_L11_Ne4v3pLJ1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
AC [auth Lw]Ribosomal_60se4v3pLw1 A: alpha arraysX: 60S acidic ribosomal protein P1/P2 (From Topology)H: 60S acidic ribosomal protein P1/P2 (From Topology)T: 60S acidic ribosomal protein P1/P2F: Ribosomal_60sECOD (1.6)
ZB [auth Lv]Ribosomal_60se4v3pLv1 A: alpha arraysX: 60S acidic ribosomal protein P1/P2 (From Topology)H: 60S acidic ribosomal protein P1/P2 (From Topology)T: 60S acidic ribosomal protein P1/P2F: Ribosomal_60sECOD (1.6)
BC [auth Lc]Ribosomal_L29_2e4v3pLc1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
CC [auth Le]Ribosomal_L30_1e4v3pLe1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
DC [auth Ls]Ribosomal_L10e4v3pLs1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
DC [auth Ls]Ribosomal_P0_L10ee4v3pLs2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
H [auth SJ]Ribosomal_S10_1e4v3pSJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
EC [auth LC]Ribosomal_L3e4v3pLC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
FC [auth LD]Ribosomal_L4e4v3pLD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
FC [auth LD]Ribos_L4_asso_Ce4v3pLD2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
GC [auth LK]Ribosomal_L13e4v3pLK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
HC [auth Lm]Ribosomal_L37aee4v3pLm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
IC [auth LI]Ribosomal_L16e4v3pLI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
I [auth SK]Ribosomal_S11e4v3pSK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth Sa]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth SN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
C [auth SB]PF07650KH domain (KH_2)KH domain- Domain
C [auth SB]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
JA [auth LA]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
LA [auth LE]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
LA [auth LE]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
OA [auth LM]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
RA [auth LR]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
TA [auth LT]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
BB [auth Lf]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
GB [auth Lo]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
LB [auth LG]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
RB [auth Li]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
TB [auth Lk]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
XB [auth Lt],
YB [auth Lu]
PF0042860s Acidic ribosomal protein (Ribosomal_60s)60s Acidic ribosomal protein- Family
AC [auth Lw],
ZB [auth Lv]
PF0042860s Acidic ribosomal protein (Ribosomal_60s)60s Acidic ribosomal protein- Family
BC [auth Lc]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
CC [auth Le]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
CC [auth Le]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
EC [auth LC]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
GC [auth LK]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
HC [auth Lm]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth Sa]G protein beta subunit- -
J [auth SL]40S ribosomal protein S23---
K [auth SM]40S ribosomal protein S18---
L [auth SO]40S ribosomal protein S13-1---
M [auth SQ]40S ribosomal protein S17-4---
N [auth SP]40S ribosomal protein S11---
O [auth SS]40S ribosomal protein S19---
P [auth SR]40S ribosomal protein S15---
Q [auth SV]40S ribosomal protein S25---
R [auth SW]40S WHEAT GERM RIBOSOME1---
S [auth SY]40S ribosomal protein S28---
B [auth SA]40S ribosomal protein SA---
T [auth SZ]40S ribosomal protein S30---
U [auth Sc]Unknown 40S wheat germ ribosome protein 2---
V [auth Sb]Unknown 40S wheat germ ribosome protein 3---
W [auth SU]Unknown 40S wheat germ ribosome protein 3---
X [auth SX]40S ribosomal protein S27---
Y [auth SC]40S ribosomal protein S9---
Z [auth SG]Unknown 40S wheat germ ribosome protein 4---
AA [auth SH]Ribosomal protein S15---
BA [auth SN]40S ribosomal protein S29
CA [auth ST]40S ribosomal protein S21---
C [auth SB]Putative 40S ribosomal protein S3
DA [auth S3]40S WHEAT GERM RIBOSOME protein 4---
EA [auth S2]40S ribosomal RNA---
FA [auth S1]18S ribosomal RNA---
GA [auth L1]26S ribosomal RNA---
HA [auth L3]5S ribosomal RNA---
IA [auth L2]5.8S ribosomal RNA---
JA [auth LA]Ribosomal protein
KA [auth LB]60S ribosomal protein L2---
LA [auth LE]Ribosomal protein L11
MA [auth LF]60S ribosomal protein L9---
D [auth SD]40S ribosomal protein S4---
NA [auth LH]60S ribosomal protein L7a---
OA [auth LM]Ribosomal Pr 117
PA [auth LP]Ribosomal protein L15---
QA [auth LO]60S ribosomal protein L27a-3---
RA [auth LR]60S ribosomal protein L18
SA [auth LQ]60S ribosomal protein L5---
TA [auth LT]Ribosomal protein L19
UA [auth LU]60S ribosomal protein L21---
VA [auth LV]60S ribosomal protein L17---
WA [auth LX]60S ribosomal protein L23a---
E [auth SE]40S ribosomal protein S2---
XA [auth LZ]60S ribosomal protein L24---
YA [auth LY]60S ribosomal protein L26---
ZA [auth Lb]60S ribosomal protein l28---
AB [auth Ld]60S ribosomal protein L29---
BB [auth Lf]60S ribosomal protein L30 -
CB [auth Lg]60S ribosomal protein L31---
DB [auth Lh]Ribosomal L32---
EB [auth Ll]Ribosomal protein L37---
FB [auth Ln]60S ribosomal protein L38---
GB [auth Lo]Ribosomal protein L39
F [auth SF]40S ribosomal protein S5---
HB [auth Lr]60S ribosomal protein L44---
IB [auth Lq]Unknown 60S wheat germ ribosome protein 1---
JB [auth Ly],
VB [auth Lx]
Unknown 60S wheat germ ribosome protein 2---
KB [auth Lz]Unknown 60S wheat germ ribosome protein 3---
LB [auth LG]60S ribosomal protein L6
MB [auth LL]Unknown 60S wheat germ ribosome protein 5---
NB [auth LN]Unknown 60S wheat germ ribosome protein 6---
OB [auth LS]60S ribosomal protein L18a---
PB [auth LW]60S ribosomal protein L22---
QB [auth La]60S ribosomal protein L27---
G [auth SI]40S ribosomal protein S16---
RB [auth Li]Ribosomal protein l34
SB [auth Lj]ribosomal protein L35A---
TB [auth Lk]60S ribosomal protein L36
UB [auth Lp]Ubiquitin-60S ribosomal protein L40-1---
WB [auth LJ]60S ribosomal protein L12---
XB [auth Lt],
YB [auth Lu]
Ribosomal protein P1
AC [auth Lw],
ZB [auth Lv]
60S acidic ribosomal protein P2A
BC [auth Lc]60S ribosomal protein L35
CC [auth Le]Ribosomal protein L7
DC [auth Ls]60S acidic ribosomal protein P0---
H [auth SJ]40S ribosomal protein S20---
EC [auth LC]Ribosomal protein L3
FC [auth LD]60S ribosomal protein L4/L1---
GC [auth LK]Ribosomal protein L13a
HC [auth Lm]60S ribosomal protein L37a, expressed
IC [auth LI]60S ribosomal protein L10-1---
I [auth SK]40S ribosomal protein S14---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth Sa]IPR001632G-protein, beta subunitDomain
A [auth Sa]IPR001680WD40 repeatRepeat
A [auth Sa]IPR019775WD40 repeat, conserved siteConserved Site
A [auth Sa]IPR016346Guanine nucleotide-binding protein, beta subunitFamily
A [auth Sa]IPR020472G-protein beta WD-40 repeatRepeat
A [auth Sa]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth Sa]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth SN]IPR001209Small ribosomal subunit protein uS14Family
BA [auth SN]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
BA [auth SN]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
C [auth SB]IPR004044K Homology domain, type 2Domain
C [auth SB]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth SB]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth SB]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth SB]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
C [auth SB]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth SB]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
JA [auth LA]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
JA [auth LA]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
JA [auth LA]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
JA [auth LA]IPR002143Large ribosomal subunit protein uL1Family
JA [auth LA]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
LA [auth LE]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
LA [auth LE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
LA [auth LE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
LA [auth LE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
LA [auth LE]IPR002132Large ribosomal subunit protein uL5Family
OA [auth LM]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
OA [auth LM]IPR000218Large ribosomal subunit protein uL14Family
OA [auth LM]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
RA [auth LR]IPR021131Large ribosomal subunit protein uL15/eL18Domain
RA [auth LR]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
RA [auth LR]IPR000039Large ribosomal subunit protein eL18Family
RA [auth LR]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
TA [auth LT]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
TA [auth LT]IPR039547Large ribosomal subunit protein eL19Family
TA [auth LT]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
TA [auth LT]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
TA [auth LT]IPR000196Large ribosomal subunit protein eL19 domainDomain
TA [auth LT]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
BB [auth Lf]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
BB [auth Lf]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BB [auth Lf]IPR039109Large ribosomal subunit protein eL30-likeFamily
BB [auth Lf]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GB [auth Lo]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
GB [auth Lo]IPR000077Large ribosomal subunit protein eL39Family
GB [auth Lo]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
LB [auth LG]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
LB [auth LG]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LB [auth LG]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
LB [auth LG]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LB [auth LG]IPR000915Large ribosomal subunit protein eL6Family
RB [auth Li]IPR008195Large ribosomal subunit protein eL34Family
RB [auth Li]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
TB [auth Lk]IPR000509Large ribosomal subunit protein eL36Family
TB [auth Lk]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
XB [auth Lt],
YB [auth Lu]
IPR027534Large ribosomal subunit protein P1/P2Family
XB [auth Lt],
YB [auth Lu]
IPR038716Large ribosomal subunit protein P1/P2, N-terminal domainHomologous Superfamily
AC [auth Lw],
ZB [auth Lv]
IPR027534Large ribosomal subunit protein P1/P2Family
AC [auth Lw],
ZB [auth Lv]
IPR038716Large ribosomal subunit protein P1/P2, N-terminal domainHomologous Superfamily
AC [auth Lw],
ZB [auth Lv]
IPR044076Large ribosomal subunit protein P2, eukaryotesFamily
BC [auth Lc]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
BC [auth Lc]IPR001854Large ribosomal subunit protein uL29Family
BC [auth Lc]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
CC [auth Le]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
CC [auth Le]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
CC [auth Le]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CC [auth Le]IPR039699Large ribosomal subunit protein uL30Family
CC [auth Le]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
CC [auth Le]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CC [auth Le]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EC [auth LC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
EC [auth LC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
EC [auth LC]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
EC [auth LC]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
EC [auth LC]IPR000597Large ribosomal subunit protein uL3Family
GC [auth LK]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
GC [auth LK]IPR005822Large ribosomal subunit protein uL13Family
GC [auth LK]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
GC [auth LK]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
HC [auth Lm]IPR002674Large ribosomal subunit protein eL43Family
HC [auth Lm]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HC [auth Lm]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily