4UZ3

Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4uz3a1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
B	d4uz3b1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d4uz3c_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)
C	SCOP2 Family	LysM domain	8076154	4000905	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	LysM domain-like	8076155	3001938	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LysM_1	e4uz3A1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)
B	LysM_1	e4uz3B1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)
C	LysM_1	e4uz3C1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
A, B, C	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C	IPR018392	LysM domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.