4UXA | pdb_00004uxa

Improved variant of (R)-selective manganese-dependent hydroxynitrile lyase from bacteria

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4uxaa_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
C	d4uxac_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
E	d4uxae_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
F	d4uxaf_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
G	d4uxag_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
H	d4uxah_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
I	d4uxai_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
K	d4uxak_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
L	d4uxal_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
M	d4uxam_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
R	d4uxar_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
T	d4uxat_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
S	d4uxas_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
Q	d4uxaq_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
P	d4uxap_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
O	d4uxao_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
N	d4uxan_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
J	d4uxaj_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
D	d4uxad_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
B	d4uxab_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cas_Cas5d	e4uxaA1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
C	Cas_Cas5d	e4uxaC1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
E	Cas_Cas5d	e4uxaE1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
F	Cas_Cas5d	e4uxaF1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
G	Cas_Cas5d	e4uxaG1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
H	Cas_Cas5d	e4uxaH1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
I	Cas_Cas5d	e4uxaI1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
K	Cas_Cas5d	e4uxaK1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
L	Cas_Cas5d	e4uxaL1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
M	Cas_Cas5d	e4uxaM1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
R	Cas_Cas5d	e4uxaR1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
T	Cas_Cas5d	e4uxaT1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
S	Cas_Cas5d	e4uxaS1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
Q	Cas_Cas5d	e4uxaQ1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
P	Cas_Cas5d	e4uxaP1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
O	Cas_Cas5d	e4uxaO1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
N	Cas_Cas5d	e4uxaN1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
J	Cas_Cas5d	e4uxaJ1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
D	Cas_Cas5d	e4uxaD1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
B	Cas_Cas5d	e4uxaB1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
E	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
F	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
G	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
H	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
I	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
K	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
L	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
M	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
R	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
T	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
S	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
Q	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
P	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
O	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
N	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
J	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
D	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF07883	Cupin domain (Cupin_2)	Cupin domain	This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN	mandelonitrile lyase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR047263	Hydroxynitrile lyase-like, cupin domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR013096	Cupin 2, conserved barrel	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily