4UER

40S-eIF1-eIF1A-eIF3-eIF3j translation initiation complex from Lachancea kluyveri


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
S [auth I]SCOP2 FamilyTranslational machinery components8082688 4000951 SCOP2 (2022-06-29)
S [auth I]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8082689 3000100 SCOP2 (2022-06-29)
A [auth 0]SCOP2 FamilyCold shock DNA-binding domain-like8081502 4001909 SCOP2 (2022-06-29)
A [auth 0]SCOP2 SuperfamilyNucleic acid-binding proteins8081503 3000135 SCOP2 (2022-06-29)
L [auth B]SCOP2 FamilyRibosomal protein S2-like8063825 4003744 SCOP2 (2022-06-29)
L [auth B]SCOP2 SuperfamilySIS domain/Ribosomal protein S2-like8063826 3001397 SCOP2 (2022-06-29)
Q [auth G]SCOP2 FamilyRibosomal protein S78065994 4001112 SCOP2 (2022-06-29)
Q [auth G]SCOP2 SuperfamilyRibosomal protein S78065995 3000799 SCOP2 (2022-06-29)
R [auth H]SCOP2 FamilyRibosomal protein S88079070 4002027 SCOP2 (2022-06-29)
R [auth H]SCOP2 SuperfamilyRibosomal protein S88079071 3000709 SCOP2 (2022-06-29)
B [auth 1]SCOP2 FamilyCold shock DNA-binding domain-like8063421 4001909 SCOP2 (2022-06-29)
B [auth 1]SCOP2 SuperfamilyNucleic acid-binding proteins8063422 3000135 SCOP2 (2022-06-29)
T [auth J]SCOP2 FamilyRibosomal protein S108096253 4001240 SCOP2 (2022-06-29)
T [auth J]SCOP2 SuperfamilyRibosomal protein S108096254 3001336 SCOP2 (2022-06-29)
U [auth K]SCOP2 FamilyRibosomal protein L18p and S118096255 4000555 SCOP2 (2022-06-29)
U [auth K]SCOP2 SuperfamilyTranslational machinery components8096256 3000571 SCOP2 (2022-06-29)
W [auth M]SCOP2 FamilyRibosomal protein S138096257 4000260 SCOP2 (2022-06-29)
W [auth M]SCOP2 SuperfamilyS13-like H2TH domain8096258 3000053 SCOP2 (2022-06-29)
X [auth N]SCOP2 FamilyRibosomal protein S14p/S29e8047585 4003647 SCOP2 (2022-06-29)
X [auth N]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052591 3000068 SCOP2 (2022-06-29)
Y [auth O]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138052948 4000767 SCOP2 (2022-06-29)
Y [auth O]SCOP2 Family40S Ribosomal protein S13 N-terminal domain-like8050315 4006843 SCOP2 (2022-06-29)
Y [auth O]SCOP2 SuperfamilyS15/NS1 RNA-binding domain8052950 3001284 SCOP2 (2022-06-29)
Y [auth O]SCOP2 SuperfamilyHomeodomain-like8052949 3000001 SCOP2 (2022-06-29)
AA [auth Q]SCOP2 FamilyCold shock DNA-binding domain-like8052713 4001909 SCOP2 (2022-06-29)
AA [auth Q]SCOP2 FamilyRibosomal S17 N-terminal domain-like8045082 4004290 SCOP2 (2022-06-29)
AA [auth Q]SCOP2 SuperfamilyNucleic acid-binding proteins8052714 3000135 SCOP2 (2022-06-29)
AA [auth Q]SCOP2 SuperfamilyRibosomal S17 N-terminal domain-like8052712 3002138 SCOP2 (2022-06-29)
EA [auth U]SCOP2 FamilyL30e/L7ae ribosomal proteins8077132 4001513 SCOP2 (2022-06-29)
EA [auth U]SCOP2 SuperfamilyL30e-like8077133 3001739 SCOP2 (2022-06-29)
GA [auth W]SCOP2 FamilyEukaryotic ribosomal protein S4e-like8050333 4006847 SCOP2 (2022-06-29)
GA [auth W]SCOP2 FamilyCold shock DNA-binding domain-like8048396 4001909 SCOP2 (2022-06-29)
GA [auth W]SCOP2 FamilyRibosomal protein S4e C-terminal KOW domain-like8044903 4004197 SCOP2 (2022-06-29)
GA [auth W]SCOP2 SuperfamilyAlpha-L RNA-binding motif8052739 3001473 SCOP2 (2022-06-29)
GA [auth W]SCOP2 SuperfamilyNucleic acid-binding proteins8052740 3000135 SCOP2 (2022-06-29)
GA [auth W]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052741 3000334 SCOP2 (2022-06-29)
HA [auth X]SCOP2 FamilyRibosomal protein S30e-like8046416 4005067 SCOP2 (2022-06-29)
HA [auth X]SCOP2 SuperfamilyRibosomal protein S30e-like8053458 3002190 SCOP2 (2022-06-29)
IA [auth Y]SCOP2 FamilyRibosomal protein S6e8048565 4006143 SCOP2 (2022-06-29)
IA [auth Y]SCOP2 SuperfamilyGS N-terminal domain-like8053169 3000408 SCOP2 (2022-06-29)
JA [auth Z]SCOP2 FamilyRibosomal protein S21e8048773 4006215 SCOP2 (2022-06-29)
JA [auth Z]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053132 3000068 SCOP2 (2022-06-29)
MA [auth c]SCOP2 FamilyEukaryotic translation initiation factor 3 subunit C (EIF3C) N-terminal domain-like8047256 4005530 SCOP2 (2022-06-29)
MA [auth c]SCOP2 FamilyPCI domain (PINT motif)8093049 4000147 SCOP2 (2022-06-29)
MA [auth c]SCOP2 SuperfamilyTPR-like8093046 3001345 SCOP2 (2022-06-29)
MA [auth c]SCOP2 SuperfamilyWinged helix DNA-binding domain8093053 3000034 SCOP2 (2022-06-29)
E [auth 4]SCOP2 FamilyRibosomal S3Ae8048441 4006095 SCOP2 (2022-06-29)
E [auth 4]SCOP2 SuperfamilyRibosomal S3Ae-like8053213 3002166 SCOP2 (2022-06-29)
F [auth 5]SCOP2 FamilyRibosomal protein S26e8048841 4006236 SCOP2 (2022-06-29)
F [auth 5]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053145 3000068 SCOP2 (2022-06-29)
H [auth 7]SCOP2 FamilyeS10-like8051616 4007434 SCOP2 (2022-06-29)
H [auth 7]SCOP2 SuperfamilyWinged helix DNA-binding domain8055719 3000034 SCOP2 (2022-06-29)
I [auth 8]SCOP2 FamilyRibosomal protein S25-like8051330 4007308 SCOP2 (2022-06-29)
I [auth 8]SCOP2 SuperfamilyWinged helix DNA-binding domain8090999 3000034 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth E]Ribosomal_S5_C_1e4uerE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
O [auth E]Ribosomal_S5_3e4uerE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
O [auth E]Ribosomal_S5_2e4uerE1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
S [auth I]Ribosomal_S9e4uerI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
BA [auth R]ANAPC4_WD40_2e4uerR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
CA [auth S]Ribosomal_S19e4uerS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
DA [auth T]Ribosomal_S19ee4uerT1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
LA [auth b]DPPIV_Ne4uerb1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 9-bladedF: DPPIV_NECOD (1.6)
LA [auth b]RRM_1_2e4uerb2 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_2ECOD (1.6)
A [auth 0]eIF-1ae4uer01 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: eIF-1aECOD (1.6)
J [auth 9]Ribosomal_S27e4uer91 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
L [auth B]Ribosomal_S2_2e4uerB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
M [auth C]Ribosomal_S3_Ce4uerC2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
M [auth C]KH_2_3e4uerC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
N [auth D]S4e4uerD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
P [auth F]SUI1e4uerF1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: SUI1ECOD (1.6)
Q [auth G]Ribosomal_S7_1e4uerG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
R [auth H]Ribosomal_S8_N_1e4uerH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
R [auth H]Ribosomal_S8_C_1e4uerH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
B [auth 1]Ribosomal_S28ee4uer11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
T [auth J]Ribosomal_S10_1e4uerJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
U [auth K]Ribosomal_S11e4uerK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
V [auth L]Ribosom_S12_S23e4uerL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
W [auth M]Ribosomal_S13e4uerM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
X [auth N]Ribosomal_S14_2e4uerN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
Y [auth O]Ribosomal_S13_Ne4uerO2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
Y [auth O]Ribosomal_S15_2e4uerO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
Z [auth P]Ribosomal_S24ee4uerP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
AA [auth Q]Ribosomal_S17_1e4uerQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
C [auth 2]Ribosomal_S8ee4uer21 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
EA [auth U]Ribosomal_L7Aee4uerU1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
FA [auth V]Ribosomal_S17ee4uerV1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
GA [auth W]Ribosomal_S4ee4uerW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
GA [auth W]40S_S4_Ce4uerW2 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
GA [auth W]RS4NTe4uerW3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
HA [auth X]Ribosomal_S30e4uerX1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
IA [auth Y]Ribosomal_S6ee4uerY1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
JA [auth Z]Ribosomal_S21ee4uerZ1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
KA [auth a]PCI_3e4uera2 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_3ECOD (1.6)
KA [auth a]KOG2072e4uera1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2072ECOD (1.6)
MA [auth c]PCIe4uerc1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
MA [auth c]eIF-3c_Ne4uerc2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF-3c_NECOD (1.6)
D [auth 3]Ribosomal_S7e_Ne4uer31 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
D [auth 3]Ribosomal_S7e_C_2e4uer32 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_2ECOD (1.6)
E [auth 4]Ribosomal_S3Ae_Ne4uer41 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
E [auth 4]Ribosomal_S3Ae_Ce4uer42 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
F [auth 5]Ribosomal_S26ee4uer51 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
G [auth 6]Ribosomal_S27ee4uer61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
H [auth 7]S10_plectine4uer71 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
I [auth 8]Ribosomal_S25e4uer81 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
O [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
S [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
BA [auth R]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
DA [auth T]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
LA [auth b]PF08662Eukaryotic translation initiation factor eIF2A (eIF2A)Eukaryotic translation initiation factor eIF2A- Repeat
LA [auth b]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
A [auth 0]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.Domain
J [auth 9]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
L [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
M [auth C]PF07650KH domain (KH_2)KH domain- Domain
M [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
N [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
N [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
P [auth F]PF01253Translation initiation factor SUI1 (SUI1)Translation initiation factor SUI1- Domain
Q [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
R [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
B [auth 1]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
T [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
U [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
V [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
W [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
X [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
Y [auth O]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
Y [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
Z [auth P]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
AA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
AA [auth Q]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
C [auth 2]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
EA [auth U]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth V]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
GA [auth W]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
GA [auth W]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
GA [auth W]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
GA [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
GA [auth W]PF00467KOW motif (KOW)KOW motif- Family
HA [auth X]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
IA [auth Y]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
JA [auth Z]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
MA [auth c]PF05470Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)Eukaryotic translation initiation factor 3 subunit 8 N-terminus- Repeat
MA [auth c]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
D [auth 3]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
E [auth 4]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
F [auth 5]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
G [auth 6]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
H [auth 7]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
I [auth 8]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O [auth E]US5
S [auth I]US9
BA [auth R]RACK1 - -
CA [auth S]US19
DA [auth T]ES19
LA [auth b]EIF3B
A [auth 0]EIF1A - -
J [auth 9]ES31
K [auth A]18S RRNA---
L [auth B]US2
M [auth C]US3
N [auth D]US4
P [auth F]EIF1 - -
Q [auth G]US7
R [auth H]US8
B [auth 1]ES28
T [auth J]US10
U [auth K]US11
V [auth L]US12
W [auth M]US13
X [auth N]US14
Y [auth O]US15
Z [auth P]ES24
AA [auth Q]US17
C [auth 2]ES8
EA [auth U]ES12
FA [auth V]ES17
GA [auth W]ES4
HA [auth X]ES30
IA [auth Y]ES6
JA [auth Z]ES21
KA [auth a]EIF3A
MA [auth c]EIF3C
D [auth 3]ES7
E [auth 4]ES1
F [auth 5]ES26
G [auth 6]ES27
H [auth 7]ES10- -
I [auth 8]ES25- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O [auth E]IPR000851Small ribosomal subunit protein uS5Family
O [auth E]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
O [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
O [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
O [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
O [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
O [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
S [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
S [auth I]IPR000754Small ribosomal subunit protein uS9Family
S [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
BA [auth R]IPR045223Small ribosomal subunit protein RACK1-likeFamily
BA [auth R]IPR001680WD40 repeatRepeat
BA [auth R]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth R]IPR020472G-protein beta WD-40 repeatRepeat
BA [auth R]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth R]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth S]IPR002222Small ribosomal subunit protein uS19Family
CA [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
CA [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
CA [auth S]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
DA [auth T]IPR001266Small ribosomal subunit protein eS19Family
DA [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
DA [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LA [auth b]IPR013979Translation initiation factor, beta propellor-like domainDomain
LA [auth b]IPR034363eIF3B, RNA recognition motifDomain
LA [auth b]IPR000504RNA recognition motif domainDomain
LA [auth b]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth b]IPR011400Eukaryotic translation initiation factor 3 subunit BFamily
LA [auth b]IPR035979RNA-binding domain superfamilyHomologous Superfamily
LA [auth b]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth 0]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
A [auth 0]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth 0]IPR006196RNA-binding domain, S1, IF1 typeDomain
A [auth 0]IPR001253Translation initiation factor 1A (eIF-1A)Family
J [auth 9]IPR002906Small ribosomal subunit protein eS31Domain
J [auth 9]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
J [auth 9]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
L [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
L [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
L [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
L [auth B]IPR001865Small ribosomal subunit protein uS2Family
L [auth B]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
M [auth C]IPR004044K Homology domain, type 2Domain
M [auth C]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
M [auth C]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
M [auth C]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
M [auth C]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
M [auth C]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
M [auth C]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
N [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
N [auth D]IPR002942RNA-binding S4 domainDomain
N [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
N [auth D]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
N [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth D]IPR022801Small ribosomal subunit protein uS4Family
P [auth F]IPR005874Eukaryotic translation initiation factor SUI1Family
P [auth F]IPR001950SUI1 domainDomain
P [auth F]IPR036877SUI1 domain superfamilyHomologous Superfamily
Q [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
Q [auth G]IPR000235Small ribosomal subunit protein uS7Family
Q [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
Q [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
Q [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
R [auth H]IPR000630Small ribosomal subunit protein uS8Family
R [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
R [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
B [auth 1]IPR028626Ribosomal protein eS28 conserved siteConserved Site
B [auth 1]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth 1]IPR000289Small ribosomal subunit protein eS28Family
T [auth J]IPR001848Small ribosomal subunit protein uS10Family
T [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
T [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
T [auth J]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
T [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
U [auth K]IPR001971Small ribosomal subunit protein uS11Family
U [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
U [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
V [auth L]IPR006032Small ribosomal subunit protein uS12Family
V [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth L]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
W [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
W [auth M]IPR001892Small ribosomal subunit protein uS13Family
W [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
W [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
X [auth N]IPR001209Small ribosomal subunit protein uS14Family
X [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
X [auth N]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
X [auth N]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Y [auth O]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
Y [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Y [auth O]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
Y [auth O]IPR000589Small ribosomal subunit protein uS15Family
Z [auth P]IPR001976Small ribosomal subunit protein eS24Family
Z [auth P]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth P]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
AA [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
AA [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth Q]IPR000266Small ribosomal subunit protein uS17Family
AA [auth Q]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
AA [auth Q]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
C [auth 2]IPR001047Small ribosomal subunit protein eS8Family
C [auth 2]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
C [auth 2]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
C [auth 2]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
EA [auth U]IPR000530Small ribosomal subunit protein eS12Family
EA [auth U]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EA [auth U]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
EA [auth U]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
FA [auth V]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
FA [auth V]IPR001210Small ribosomal subunit protein eS17Family
FA [auth V]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
GA [auth W]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
GA [auth W]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
GA [auth W]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
GA [auth W]IPR002942RNA-binding S4 domainDomain
GA [auth W]IPR013845Small ribosomal subunit protein eS4, central regionDomain
GA [auth W]IPR000876Small ribosomal subunit protein eS4Family
GA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth W]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
GA [auth W]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
GA [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
GA [auth W]IPR005824KOWDomain
HA [auth X]IPR006846Small ribosomal subunit protein eS30Family
IA [auth Y]IPR014401Small ribosomal subunit protein eS6-likeFamily
IA [auth Y]IPR001377Small ribosomal subunit protein eS6Family
IA [auth Y]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
JA [auth Z]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
JA [auth Z]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
JA [auth Z]IPR001931Small ribosomal subunit protein eS21Family
KA [auth a]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
KA [auth a]IPR000717Proteasome component (PCI) domainDomain
MA [auth c]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
MA [auth c]IPR000717Proteasome component (PCI) domainDomain
MA [auth c]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
D [auth 3]IPR000554Small ribosomal subunit protein eS7Family
D [auth 3]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
E [auth 4]IPR001593Small ribosomal subunit protein eS1Family
E [auth 4]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
E [auth 4]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
F [auth 5]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
F [auth 5]IPR000892Small ribosomal subunit protein eS26Family
F [auth 5]IPR047864Ribosomal protein eS26, conserved siteConserved Site
G [auth 6]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
G [auth 6]IPR000592Small ribosomal subunit protein eS27Family
G [auth 6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
H [auth 7]IPR037447Small ribosomal subunit protein eS10Family
H [auth 7]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
H [auth 7]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth 7]IPR005326Plectin/eS10, N-terminalDomain
I [auth 8]IPR004977Small ribosomal subunit protein eS25Family
I [auth 8]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily