4U87
Crystal structure of the Ba-soaked C2 crystal form of pMV158 replication initiator RepB (P3221 space group)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rep_2_C | e4u87A2 | A: alpha arrays | X: HTH | H: Replication protein RepB C-terminal domain (From Topology) | T: Replication protein RepB C-terminal domain | F: Rep_2_C | ECOD (1.6) |
A | Rep_2 | e4u87A1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_2 | ECOD (1.6) |
B | Rep_2_C | e4u87B2 | A: alpha arrays | X: HTH | H: Replication protein RepB C-terminal domain (From Topology) | T: Replication protein RepB C-terminal domain | F: Rep_2_C | ECOD (1.6) |
B | Rep_2 | e4u87B1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_2 | ECOD (1.6) |
C | Rep_2_C | e4u87C2 | A: alpha arrays | X: HTH | H: Replication protein RepB C-terminal domain (From Topology) | T: Replication protein RepB C-terminal domain | F: Rep_2_C | ECOD (1.6) |
C | Rep_2 | e4u87C1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1310.30 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
A | 1.10.10.1480 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Plasmid replication protein | CATH (4.3.0) |
B | 3.40.1310.30 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
B | 1.10.10.1480 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Plasmid replication protein | CATH (4.3.0) |
C | 3.40.1310.30 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
C | 1.10.10.1480 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Plasmid replication protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01719 | Plasmid replication protein (Rep_2) | Plasmid replication protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Replication protein RepB |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041919 | Plasmid replication protein, C-terminal domain superfamily | Homologous Superfamily | |
IPR002631 | Plasmid replication protein | Family |