4RUG | pdb_00004rug

Cyrstal structure of SLIT-ROBO Rho GTPase-activating protein 2 fragment

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SH3-domain	8067950	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8067950	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	p450	e4rugB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Rubredoxin-related	T: Rubredoxin-related	F: p450	ECOD (v294.1)
A	p450	e4rugA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Rubredoxin-related	T: Rubredoxin-related	F: p450	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00018	SH3 domain (SH3_1)	SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	SLIT-ROBO Rho GTPase-activating protein 2	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity identical protein binding protein homodimerization activity small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity identical protein binding protein homodimerization activity protein dimerization activity	developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis synapse assembly system development actin filament severing actin filament-based process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling signal transduction cell communication cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation plasma membrane bounded cell projection organization generation of neurons anatomical structure morphogenesis neuron development dendritic spine development dendrite development filopodium assembly plasma membrane bounded cell projection assembly cell projection assembly inhibitory synapse assembly negative regulation of locomotion regulation of cell motility negative regulation of biological process regulation of locomotion negative regulation of cellular process regulation of cell migration negative regulation of cell motility cell migration cell motility negative regulation of cell migration locomotion regulation of signaling small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration forebrain development glial cell migration microtubule cytoskeleton organization telencephalon glial cell migration cerebral cortex development pseudopodium assembly telencephalon cell migration forebrain cell migration gliogenesis cell motility involved in cerebral cortex radial glia guided migration cerebral cortex cell migration head development animal organ development brain development cerebral cortex radially oriented cell migration modulation of microtubule cytoskeleton involved in cerebral cortex radial glia guided migration pallium development organelle organization central nervous system development microtubule-based process cerebral cortex radial glia-guided migration telencephalon development cytoskeleton organization pseudopodium organization regulation of cellular component organization regulation of synapse structure or activity regulation of synapse assembly regulation of biological quality regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization negative regulation of neuron migration regulation of neuron migration neuron migration lamellipodium assembly lamellipodium assembly involved in ameboidal cell migration lamellipodium organization ameboidal-type cell migration	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane intracellular anatomical structure cytoplasm cytosol neuron spine dendritic spine head neuron projection dendritic spine somatodendritic compartment dendrite dendritic tree membrane-bounded organelle intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle glutamatergic synapse postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051627	SLIT-ROBO Rho GTPase-activating	Family
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B	IPR035648	srGAP1/2/3, SH3 domain	Domain
A, B	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
A, B	IPR008936	Rho GTPase activation protein	Homologous Superfamily
A, B	IPR031160	F-BAR domain	Domain
A, B	IPR000198	Rho GTPase-activating protein domain	Domain
A, B	IPR001452	SH3 domain	Domain
A, B	IPR001060	FCH domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O75044	atypical teratoid rhabdoid tumor lung carcinoma psoriasis breast cancer medulloblastoma systemic lupus erythematosus large cell medulloblastoma ovarian cancer tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.