4RCT | pdb_00004rct

Crystal structure of R-protein of NgoAVII restriction endonuclease

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	DNA-binding pseudobarrel domain	8056986	3000213	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phospholipase D/nuclease-like	8056985	3000664	SCOP2B (2022-06-29)
A	SCOP2 Family	NgoFVII-like	8045146	4004319	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phospholipase D/nuclease-like	8056985	3000664	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DNA-binding pseudobarrel domain	8056986	3000213	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Peptidase_M99_C	e4rctB1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (v294.1)
A	RE_NgoFVII	e4rctA1	A: a/b three-layered sandwiches	X: N-cbl like	H: UDP-Glycosyltransferase/glycogen phosphorylase	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: RE_NgoFVII	ECOD (v294.1)
A	ABC_tran, AAA_21	e4rctA2	A: a/b three-layered sandwiches	X: N-cbl like	H: UDP-Glycosyltransferase/glycogen phosphorylase	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: ABC_tran, AAA_21	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.870.10	Alpha Beta	2-Layer Sandwich	Endonuclease	Chain A	CATH (4.3.0)
A	3.30.870.10	Alpha Beta	2-Layer Sandwich	Endonuclease	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09565	NgoFVII restriction endonuclease N-terminal PLD domain (RE_NgoFVII)	NgoFVII restriction endonuclease N-terminal PLD domain	This family includes the NgoFVII (recognises GCSGC but cleavage site unknown) restriction endonuclease.	Domain
A, B	PF20731	NgoFVII C-terminal B3-like DNA-binding domain (RE_NgoFVII_C)	NgoFVII C-terminal B3-like DNA-binding domain	This family includes the NgoFVII (recognises GCSGC but cleavage site unknown) restriction endonuclease. This entry represents the RIFT related domain [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Restriction endonuclease R.NgoVII	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048923	Restriction endonuclease, type II, NgoFVII, C-terminal B3-like DNA-binding domain	Domain
A, B	IPR019065	Restriction endonuclease, type II, NgoFVII, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.