4RC1 | pdb_00004rc1

Structure of the methanofuran/methanopterin biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii with PRPP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CutC/MfnB-like	8092553	3000639	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	H_PPase	e4rc1A1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
B	Chal_sti_synt_C	e4rc1B1	A: a/b three-layered sandwiches	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Chal_sti_synt_C	ECOD (v294.1)
C	H_PPase	e4rc1C1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
D	H_PPase	e4rc1D1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
E	H_PPase	e4rc1E1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
F	H_PPase	e4rc1F1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
G	H_PPase	e4rc1G1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
H	H_PPase	e4rc1H1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)
I	H_PPase	e4rc1I1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: H_PPase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF04476	4-HFC-P synthase (4HFCP_synth)	4-HFC-P synthase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	UPF0264 protein MJ1099	lyase activity catalytic activity carbon-carbon lyase activity	biosynthetic process methanofuran metabolic process metabolic process cellular process methanofuran biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR007565	(5-formylfuran-3-yl)methyl phosphate synthase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR011060	Ribulose-phosphate binding barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR035081	(5-formylfuran-3-yl)methyl phosphate synthase, archaea	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.