4RBV

PduA K26A S40GSG mutant, from Salmonella enterica serovar Typhimurium LT2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4rbva_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d4rbvb1	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d4rbvb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
C	d4rbvc_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
E	d4rbve_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
F	d4rbvf_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
D	d4rbvd_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
G	d4rbvg_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BMC	e4rbvA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
B	BMC	e4rbvB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
C	BMC	e4rbvC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
E	BMC	e4rbvE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
F	BMC	e4rbvF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
D	BMC	e4rbvD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
G	BMC	e4rbvG1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
G	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Propanediol utilization protein PduA	-	diol catabolic process polyol metabolic process alcohol catabolic process catabolic process organic hydroxy compound metabolic process polyol catabolic process alcohol metabolic process propanediol catabolic process glycol metabolic process diol metabolic process organic substance metabolic process propanediol metabolic process organic hydroxy compound catabolic process glycol catabolic process diol catabolic process polyol metabolic process alcohol catabolic process catabolic process organic hydroxy compound metabolic process polyol catabolic process alcohol metabolic process propanediol catabolic process glycol metabolic process diol metabolic process organic substance metabolic process propanediol metabolic process organic hydroxy compound catabolic process glycol catabolic process small molecule metabolic process metabolic process small molecule catabolic process organic substance catabolic process	intracellular organelle propanediol degradation polyhedral organelle bacterial microcompartment intracellular anatomical structure organelle intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.