4R7O | pdb_00004r7o

Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)
C	SCOP2 Family	Glycerophosphoryl diester phosphodiesterase	8101332	4000418	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PLC-like phosphodiesterases	8101333	3000615	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase	e4r7oA1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
B	Pkinase	e4r7oB1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
C	Pkinase	e4r7oC1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
D	Pkinase	e4r7oD1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
E	Pkinase	e4r7oE1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
G	Pkinase	e4r7oG1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)
F	Pkinase	e4r7oF1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
B	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
C	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
D	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
E	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
G	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
F	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF03009	Glycerophosphoryl diester phosphodiesterase family (GDPD)	Glycerophosphoryl diester phosphodiesterase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Glycerophosphoryl diester phosphodiesterase, putative	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	primary metabolic process metabolic process cellular process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR030395	Glycerophosphodiester phosphodiesterase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.