4R5O | pdb_00004r5o

Crystal structure of a Quinonprotein alcohol dehydrogenase-like protein (BT1487) from Bacteroides thetaiotaomicron VPI-5482 at 2.64 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
B	SCOP2 Family	BT1487 N-terminal domain-like	8046192	4004944	SCOP2 (2022-06-29)
B	SCOP2 Family	BT1487 C-terminal domain-like	8046193	4004945	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PKD domain	8093016	3002045	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	RNA_pol_Rpb1_3	e4r5oD1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: RNA_pol_Rpb1_3	ECOD (v294.1)
C	RNA_pol_Rpb1_3	e4r5oC1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: RNA_pol_Rpb1_3	ECOD (v294.1)
B	RNA_pol_Rpb1_3	e4r5oB1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: RNA_pol_Rpb1_3	ECOD (v294.1)
A	DUF5074	e4r5oA1	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: DUF5074	ECOD (v294.1)
A	Pkinase	e4r5oA2	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16819	Domain of unknown function (DUF5074) (DUF5074)	Domain of unknown function (DUF5074)	-	Repeat
A, B, C, D	PF16820	PKD-like domain (PKD_3)	PKD-like domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Quinonprotein alcohol dehydrogenase-like protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR031815	Protein of unknown function DUF5074	Family
A, B, C, D	IPR041696	Bacteroidetes PKD-like domain	Domain
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.