4R4Z
Structure of PNGF-II in P21 space group
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Porph_ging | e4r4zA2 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: Porph_ging | ECOD (1.6) |
A | N-glycanase_C | e4r4zA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_C | ECOD (1.6) |
A | N-glycanase_N | e4r4zA3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_N | ECOD (1.6) |
B | Porph_ging | e4r4zB3 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: Porph_ging | ECOD (1.6) |
B | N-glycanase_C | e4r4zB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_C | ECOD (1.6) |
B | N-glycanase_N | e4r4zB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_N | ECOD (1.6) |
C | Porph_ging | e4r4zC1 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: Porph_ging | ECOD (1.6) |
C | N-glycanase_C | e4r4zC3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_C | ECOD (1.6) |
C | N-glycanase_N | e4r4zC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_N | ECOD (1.6) |
D | Porph_ging | e4r4zD2 | A: beta meanders | X: Lipoprotein localization factors LolAB | H: Lipoprotein localization factors LolAB (From Topology) | T: Lipoprotein localization factors LolAB | F: Porph_ging | ECOD (1.6) |
D | N-glycanase_C | e4r4zD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_C | ECOD (1.6) |
D | N-glycanase_N | e4r4zD3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: N-glycanase_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.1570 | Mainly Beta | Sandwich | Jelly Rolls | Peptide-N-glycosidase F, N-terminal domain | CATH (4.3.0) |
A | 2.60.120.230 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.1570 | Mainly Beta | Sandwich | Jelly Rolls | Peptide-N-glycosidase F, N-terminal domain | CATH (4.3.0) |
B | 2.60.120.230 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.1570 | Mainly Beta | Sandwich | Jelly Rolls | Peptide-N-glycosidase F, N-terminal domain | CATH (4.3.0) |
C | 2.60.120.230 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.1570 | Mainly Beta | Sandwich | Jelly Rolls | Peptide-N-glycosidase F, N-terminal domain | CATH (4.3.0) |
D | 2.60.120.230 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09113 | Peptide-N-glycosidase F, C terminal (N-glycanase_C) | Peptide-N-glycosidase F, C terminal | Members of this family adopt an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. They are similar in topology to many viral capsid proteins, as well as lectins and several glucanases. The doma ... | Domain | |
PF22252 | N-glycanase peptide, N-terminal domain (PNGase_F-II_N) | N-glycanase peptide, N-terminal domain | This domain is found at the N-terminal end of N-glycanase peptide from Elizabethkingia meningoseptica (PNGase F-II) and other bacterial sequences mainly found in flavobacteriales. This is often found associated with Pfam:PF09112 and Pfam:PF09113. | Domain | |
PF09112 | Peptide-N-glycosidase F, N terminal (N-glycanase_N) | Peptide-N-glycosidase F, N terminal | Members of this family adopt an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. They are similar in topology to many viral capsid proteins, as well as lectins and several glucanases. The doma ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008977 | PHM/PNGase F domain superfamily | Homologous Superfamily | |
IPR015197 | Peptide-N-glycosidase F, C-terminal | Domain | |
IPR014784 | Copper type II, ascorbate-dependent monooxygenase-like, C-terminal | Homologous Superfamily | |
IPR043022 | Peptide-N-glycosidase F, N-terminal domain superfamily | Homologous Superfamily | |
IPR015196 | Peptide-N-glycosidase F, N-terminal | Domain |