4R4Z | pdb_00004r4z

Structure of PNGF-II in P21 space group

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Porph_ging	e4r4zD2	A: beta meanders	X: Lipoprotein localization factors LolAB	H: Lipoprotein localization factors LolAB (From Topology)	T: Lipoprotein localization factors LolAB	F: Porph_ging	ECOD (1.6)
D	N-glycanase_C	e4r4zD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_C	ECOD (1.6)
D	N-glycanase_N	e4r4zD3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_N	ECOD (1.6)
C	Porph_ging	e4r4zC1	A: beta meanders	X: Lipoprotein localization factors LolAB	H: Lipoprotein localization factors LolAB (From Topology)	T: Lipoprotein localization factors LolAB	F: Porph_ging	ECOD (1.6)
C	N-glycanase_C	e4r4zC3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_C	ECOD (1.6)
C	N-glycanase_N	e4r4zC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_N	ECOD (1.6)
B	Porph_ging	e4r4zB3	A: beta meanders	X: Lipoprotein localization factors LolAB	H: Lipoprotein localization factors LolAB (From Topology)	T: Lipoprotein localization factors LolAB	F: Porph_ging	ECOD (1.6)
B	N-glycanase_C	e4r4zB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_C	ECOD (1.6)
B	N-glycanase_N	e4r4zB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_N	ECOD (1.6)
A	Porph_ging	e4r4zA2	A: beta meanders	X: Lipoprotein localization factors LolAB	H: Lipoprotein localization factors LolAB (From Topology)	T: Lipoprotein localization factors LolAB	F: Porph_ging	ECOD (1.6)
A	N-glycanase_C	e4r4zA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_C	ECOD (1.6)
A	N-glycanase_N	e4r4zA3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: N-glycanase_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.1570	Mainly Beta	Sandwich	Jelly Rolls	Peptide-N-glycosidase F, N-terminal domain	CATH (4.3.0)
D	2.60.120.230	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.1570	Mainly Beta	Sandwich	Jelly Rolls	Peptide-N-glycosidase F, N-terminal domain	CATH (4.3.0)
C	2.60.120.230	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.1570	Mainly Beta	Sandwich	Jelly Rolls	Peptide-N-glycosidase F, N-terminal domain	CATH (4.3.0)
B	2.60.120.230	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.1570	Mainly Beta	Sandwich	Jelly Rolls	Peptide-N-glycosidase F, N-terminal domain	CATH (4.3.0)
A	2.60.120.230	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PNGF-II	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR008977	PHM/PNGase F domain superfamily	Homologous Superfamily
A, B, C, D	IPR015197	Peptide-N-glycosidase F, C-terminal	Domain
A, B, C, D	IPR014784	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Homologous Superfamily
A, B, C, D	IPR043022	Peptide-N-glycosidase F, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR015196	Peptide-N-glycosidase F, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.