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 4QRN | pdb_00004qrn

HIGH-RESOLUTION CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 COMPLEXED WITH MANGANESE AND 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd4qrnd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Novosphingobium aromaticivorans DSM 12444 ) [TaxId: 279238 ], SCOPe (2.08)
Cd4qrnc_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Novosphingobium aromaticivorans DSM 12444 ) [TaxId: 279238 ], SCOPe (2.08)
Bd4qrnb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Novosphingobium aromaticivorans DSM 12444 ) [TaxId: 279238 ], SCOPe (2.08)
Ad4qrna1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Novosphingobium aromaticivorans DSM 12444 ) [TaxId: 279238 ], SCOPe (2.08)
Ad4qrna2 Artifacts Tags Tags Tags N-terminal Tags (Novosphingobium aromaticivorans DSM 12444 ) [TaxId: 279238 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyMetallo-dependent hydrolases 8099290 3000428 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMetallo-dependent hydrolases 8099290 3000428 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMetallo-dependent hydrolases 8099290 3000428 SCOP2B (2022-06-29)
ASCOP2 FamilyPP1699/LP2961-like 8099289 4002329 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMetallo-dependent hydrolases 8099290 3000428 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
De4qrnD1 A: alpha arraysX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF:ECOD (v295.2)
Ce4qrnC1 A: alpha arraysX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF:ECOD (v295.2)
Be4qrnB1 A: alpha arraysX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF:ECOD (v295.2)
Ae4qrnA1 A: alpha arraysX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
C3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
B3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)
A3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF04909Amidohydrolase (Amidohydro_2)AmidohydrolaseThese proteins are amidohydrolases that are related to Pfam:PF01979 [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
5-Carboxyvanillate Decarboxylase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR0324652-amino-3-carboxymuconate-6-semialdehyde decarboxylaseFamily
A, B, C, D
IPR006680Amidohydrolase-relatedDomain
A, B, C, D
IPR032466Metal-dependent hydrolaseHomologous Superfamily