Crystal Structure of Bradyrhizobium japonicum Proline Utilization A (PutA) Mutant D779W
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | e4q71B1 | A: a/b three-layered sandwiches | X: avirulence protein AvrPiz-t homologs | H: avirulence protein AvrPiz-t homologs | T: avirulence protein AvrPiz-t homologs | F: | ECOD (v294.1) | |
| B | Amidase_2 | e4q71B5 | A: a/b three-layered sandwiches | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: Amidase_2 | ECOD (v294.1) |
| B | APG6 | e4q71B4 | A: a/b three-layered sandwiches | X: HAD domain-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: APG6 | ECOD (v294.1) |
| A | e4q71A1 | A: a/b three-layered sandwiches | X: avirulence protein AvrPiz-t homologs | H: avirulence protein AvrPiz-t homologs | T: avirulence protein AvrPiz-t homologs | F: | ECOD (v294.1) | |
| A | Amidase_2 | e4q71A5 | A: a/b three-layered sandwiches | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: Amidase_2 | ECOD (v294.1) |
| A | APG6 | e4q71A4 | A: a/b three-layered sandwiches | X: HAD domain-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: APG6 | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00171 | Aldehyde dehydrogenase family (Aldedh) | Aldehyde dehydrogenase family | - | Family | |
| PF01619 | Proline dehydrogenase (Pro_dh) | Proline dehydrogenase | - | Family | |
| PF14850 | DNA-binding domain of Proline dehydrogenase (Pro_dh-DNA_bdg) | DNA-binding domain of Proline dehydrogenase | This domain lies at the N-terminus of bifunctional proline-dehydrogenases and is found to bind DNA. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002872 | Proline dehydrogenase domain | Domain | |
| IPR015590 | Aldehyde dehydrogenase domain | Domain | |
| IPR016161 | Aldehyde/histidinol dehydrogenase | Homologous Superfamily | |
| IPR029041 | FAD-linked oxidoreductase-like | Homologous Superfamily | |
| IPR016162 | Aldehyde dehydrogenase, N-terminal | Homologous Superfamily | |
| IPR050485 | Proline metabolism enzyme | Family | |
| IPR025703 | Bifunctional protein PutA | Family | |
| IPR024089 | Proline dehydrogenase PutA, domain I/II | Homologous Superfamily | |
| IPR016163 | Aldehyde dehydrogenase, C-terminal | Homologous Superfamily | |
| IPR016160 | Aldehyde dehydrogenase, cysteine active site | Conserved Site | |
| IPR005933 | Bifunctional protein PutA, C-terminal domain | Domain | |
| IPR024082 | Proline dehydrogenase PutA, domain II | Domain |














