4PVR | pdb_00004pvr

Crystal structure of partially-cleaved human l-asparaginase protein in complex with l-aspartate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Class II glutamine amidotransferases	8099986	3000131	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Class II glutamine amidotransferases	8099986	3000131	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L35p	e4pvrB1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Ribosomal_L35p	ECOD (v294.1)
A	Ribosomal_L35p	e4pvrA1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Ribosomal_L35p	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01112	Asparaginase (Asparaginase_2)	Asparaginase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Isoaspartyl peptidase/L-asparaginase	asparaginase activity amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds peptidase activity omega peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity beta-aspartyl-peptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol photoreceptor inner segment membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A, B	IPR000246	Peptidase T2, asparaginase 2	Family
A, B	IPR033844	Asparaginase-like 1, metazoa	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q7L266	allergic contact dermatitis Crohn disease large cell medulloblastoma malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis astrocytic tumor glioblastoma lung cancer malignant mesothelioma osteosarcoma pilocytic astrocytoma ulcerative colitis atypical teratoid rhabdoid tumor allergic contact dermatitis Crohn disease large cell medulloblastoma malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis astrocytic tumor glioblastoma lung cancer malignant mesothelioma osteosarcoma pilocytic astrocytoma ulcerative colitis atypical teratoid rhabdoid tumor interstitial cystitis malignant ependymoma medulloblastoma ovarian cancer psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.