4PQX | pdb_00004pqx

Crystal structure of a NigD-like protein (BACCAC_02139) from Bacteroides caccae ATCC 43185 at 2.39 A resolution

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyCTD of NigD-like 8046951 4005383 SCOP2 (2022-06-29)
ASCOP2 FamilyNTD of NigD-like 8047777 4005812 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCTD of NigD-like 8052340 3002106 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyBacterial enterotoxins 8052341 3000434 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DRibosomal_L18_c,Ribosomal_L5ee4pqxD1 A: a/b three-layered sandwichesX: Outer membrane meander beta-barrelsH: PorinsT: PorinF: Ribosomal_L18_c,Ribosomal_L5eECOD (v294.1)
CRibosomal_L18_c,Ribosomal_L5ee4pqxC1 A: a/b three-layered sandwichesX: Outer membrane meander beta-barrelsH: PorinsT: PorinF: Ribosomal_L18_c,Ribosomal_L5eECOD (v294.1)
BRibosomal_L18_c,Ribosomal_L5ee4pqxB1 A: a/b three-layered sandwichesX: Outer membrane meander beta-barrelsH: PorinsT: PorinF: Ribosomal_L18_c,Ribosomal_L5eECOD (v294.1)
ARibosomal_L18_c,Ribosomal_L5ee4pqxA1 A: a/b three-layered sandwichesX: Outer membrane meander beta-barrelsH: PorinsT: PorinF: Ribosomal_L18_c,Ribosomal_L5eECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.40.50.500 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) NigD-like N-terminal OB domainCATH (4.3.0)
D2.60.40.2370 Mainly Beta Sandwich Immunoglobulin-like NigD-like, C-terminal beta sandwich domainCATH (4.3.0)
C2.40.50.500 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) NigD-like N-terminal OB domainCATH (4.3.0)
C2.60.40.2370 Mainly Beta Sandwich Immunoglobulin-like NigD-like, C-terminal beta sandwich domainCATH (4.3.0)
B2.40.50.500 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) NigD-like N-terminal OB domainCATH (4.3.0)
B2.60.40.2370 Mainly Beta Sandwich Immunoglobulin-like NigD-like, C-terminal beta sandwich domainCATH (4.3.0)
A2.40.50.500 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) NigD-like N-terminal OB domainCATH (4.3.0)
A2.60.40.2370 Mainly Beta Sandwich Immunoglobulin-like NigD-like, C-terminal beta sandwich domainCATH (4.3.0)