4PJ3
Structural insight into the function and evolution of the spliceosomal helicase Aquarius, Structure of Aquarius in complex with AMPPNP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Aquarius N-terminal domain-like | 8045528 | 4004517 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Tandem AAA-ATPase domain | 8048221 | 4000282 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Aquarius beta-barrel domain-like | 8048214 | 4007716 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ARM repeat-like | 8090869 | 3000116 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8090871 | 3002019 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8090872 | 3002019 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Upf1 beta-barrel domain-like | 8090870 | 3002168 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21143 | e4pj3A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF21143 | ECOD (1.6) |
A | PF16399 | e4pj3A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF16399 | ECOD (1.6) |
A | PF21144 | e4pj3A5 | A: a+b two layers | X: Spliceosomal helicase Aquarius insert domain (From Topology) | H: Spliceosomal helicase Aquarius insert domain (From Topology) | T: Spliceosomal helicase Aquarius insert domain | F: PF21144 | ECOD (1.6) |
A | PF13086 | e4pj3A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13086 | ECOD (1.6) |
A | PF13087 | e4pj3A4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13087 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21144 | Intron-binding protein aquarius insert domain (Aquarius_N_3rd) | Intron-binding protein aquarius insert domain | This entry represents the insert domain of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2]. | Domain | |
PF21143 | Intron-binding protein aquarius, beta-barrel (Aquarius_N_2nd) | Intron-binding protein aquarius, beta-barrel | This entry represents the beta-barrel domain found at the N-terminal of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2]. | Domain | |
PF13086 | AAA domain (AAA_11) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF13087 | AAA domain (AAA_12) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF16399 | Intron-binding protein aquarius N-terminal (Aquarius_N_1st) | Intron-binding protein aquarius N-terminal | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR048966 | RNA helicase aquarius, beta-barrel | Domain | |
IPR048967 | RNA helicase aquarius, insertion domain | Domain | |
IPR041677 | DNA2/NAM7 helicase, helicase domain | Domain | |
IPR026300 | CWF11 family | Family | |
IPR045055 | DNA2/NAM7-like helicase | Family | |
IPR032174 | RNA helicase aquarius, N-terminal domain | Domain | |
IPR041679 | DNA2/NAM7 helicase-like, C-terminal | Domain | |
IPR047187 | Upf1-like, C-terminal helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |