4PDX | pdb_00004pdx

Crystal structure of Escherchia coli uncharacterized protein YjcS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4pdxa2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d4pdxa1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d4pdxa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d4pdxb2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d4pdxb1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d4pdxb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fe_bilin_red	e4pdxA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Fe_bilin_red	ECOD (v294.1)
B	Fe_bilin_red	e4pdxB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Fe_bilin_red	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
A	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
A	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
B	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
B	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
B	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14863	Alkyl sulfatase dimerisation (Alkyl_sulf_dimr)	Alkyl sulfatase dimerisation	-	Repeat
A, B	PF00753	Metallo-beta-lactamase superfamily (Lactamase_B)	Metallo-beta-lactamase superfamily		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative alkyl/aryl-sulfatase YjcS	linear primary-alkylsulfatase activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity sulfuric ester hydrolase activity protein binding binding protein dimerization activity cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus organic acid metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus dodecyl sulfate metabolic process response to chemical sulfur compound metabolic process metabolic process cellular process small molecule metabolic process	cellular anatomical structure extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029229	Alkyl sulfatase, C-terminal	Domain
A, B	IPR001279	Metallo-beta-lactamase	Domain
A, B	IPR029228	Alkyl sulfatase dimerisation domain	Domain
A, B	IPR038536	Alkyl/aryl-sulfatase, dimerisation domain superfamily	Homologous Superfamily
A, B	IPR052195	Bacterial Alkyl/Aryl-Sulfatase	Family
A, B	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A, B	IPR036527	SCP2 sterol-binding domain superfamily	Homologous Superfamily
A, B	IPR044097	Alkyl/aryl-sulfatase Bds1/ SdsA1 , MBL-fold	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.