4PBA
The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Substrate-like DNA
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF18491 | e4pbaB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF18491 | ECOD (1.6) |
A [auth B] | PF21598 | e4pbaB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF21598 | ECOD (1.6) |
B [auth A] | PF18491 | e4pbaA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF18491 | ECOD (1.6) |
B [auth A] | PF21598 | e4pbaA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF21598 | ECOD (1.6) |
C | PF18491 | e4pbaC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF18491 | ECOD (1.6) |
C | PF21598 | e4pbaC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF21598 | ECOD (1.6) |
D | PF18491 | e4pbaD2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF18491 | ECOD (1.6) |
D | PF21598 | e4pbaD1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF21598 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF21598 | Restriction endonuclease PvuRts1 I-like, N-terminal (PvuRts1I-like_N) | Restriction endonuclease PvuRts1 I-like, N-terminal | This domain is found at the N-terminal end of Restriction endonuclease PvuRts1 I from Proteus vulgaris and similar bacterial sequences. PvuRts1I a modification-dependent endonuclease with high selectivity for 5-hydroxymethylcytosine, an epigenetic m ... | Domain |
A [auth B], B [auth A], C, D | PF18491 | SET and RING associated domain (SRA) | SET and RING associated domain | This is the C-terminal domain found in PvuRts1I, a modification-dependent restriction endonuclease that recognizes 5-hydroxymethylcytosine (5hmC) as well as 5-glucosylhydroxymethylcytosine (5ghmC) in double-stranded DNA in bacteria. Structural analys ... | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D | IPR040674 | PvuRts1 I-like, SET and RING associated domain | Domain |
A [auth B], B [auth A], C, D | IPR048797 | Restriction endonuclease PvuRts1 I-like, N-terminal | Domain |