4OKC | pdb_00004okc

Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4okca1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
A	d4okca2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d4okcb1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d4okcb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	B_lectin	e4okcA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)
B	B_lectin	e4okcB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
B	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001480	Bulb-type lectin domain	Domain
A, B	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B	IPR052196	Bacterial Potassium Binding	Family
A, B	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily
A, B	IPR018392	LysM domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.