4OD5 | pdb_00004od5

Substrate-bound structure of a UbiA homolog from Aeropyrum pernix K1

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Fp450e4od5F1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)
Ep450e4od5E1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)
Dp450e4od5D1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)
Cp450e4od5C1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)
Bp450e4od5B1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)
Ap450e4od5A1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: p450ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
F1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)
E1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
E1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)
D1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
D1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)
C1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
C1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)
B1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
B1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)
A1.10.357.140 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2CATH (4.3.0)
A1.20.120.1780 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) UbiA prenyltransferaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01040UbiA prenyltransferase family (UbiA)UbiA prenyltransferase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
4-hydroxybenzoate octaprenyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR006371Polyprenyltransferase UbiA-likeFamily
A, B, C, D, E
IPR044878UbiA prenyltransferase superfamilyHomologous Superfamily
A, B, C, D, E
IPR000537UbiA prenyltransferaseFamily
A, B, C, D, E
IPR039653PrenyltransferaseFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicTransmembrane prenyltransferasesUbiA prenyltransferases

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D, E
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALUbiA PrenyltransferasesUbiA homolog with bound substrate