4O1V | pdb_00004o1v

SPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TRAF domain-like	8039223	3001027	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MATH	e4o1vA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: TRAF domain-like (From Topology)	T: TRAF domain-like	F: MATH	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22486	MATH domain (MATH_2)	MATH domain	This motif has been called the Meprin And TRAF-Homology (MATH) domain.ED A0A835B747.1/23-123; A0A835B747.1/23-76;	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity inositol pentakisphosphate phosphatase activity inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity inositol phosphate phosphatase activity inositol tetrakisphosphate phosphatase activity inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity enzyme regulator activity phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity inositol pentakisphosphate phosphatase activity inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity inositol phosphate phosphatase activity inositol tetrakisphosphate phosphatase activity inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity protein binding binding PDZ domain binding protein domain specific binding protein tyrosine phosphatase activity protein-containing complex binding anaphase-promoting complex binding lipid binding beta-catenin binding phosphatidylinositol bisphosphate phosphatase activity phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity phosphatidylinositol-3,4-bisphosphate phosphatase activity phosphatidylinositol phosphate phosphatase activity ubiquitin-specific protease binding enzyme binding protease binding phosphatidylinositol trisphosphate phosphatase activity phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity identical protein binding molecular function inhibitor activity phosphatidylinositol-3-phosphate phosphatase activity phosphatidylinositol monophosphate phosphatase activity	cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cell communication positive regulation of response to stimulus synaptic signaling modulation of excitatory postsynaptic potential regulation of multicellular organismal process signal transduction regulation of biological quality positive regulation of cellular process trans-synaptic signaling regulation of biological process regulation of signaling cell surface receptor signaling pathway nervous system process biological regulation cell-cell signaling chemical synaptic transmission regulation of nervous system process regulation of trans-synaptic signaling regulation of response to stimulus anterograde trans-synaptic signaling regulation of cell communication cellular process excitatory postsynaptic potential regulation of membrane potential positive regulation of signaling developmental process heart development multicellular organism development anatomical structure development animal organ development circulatory system development system development regulation of protein stability protein stabilization protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process negative regulation of locomotion regulation of cell motility regulation of response to external stimulus negative regulation of biological process negative regulation of wound healing, spreading of epidermal cells regulation of response to wounding response to stress regulation of response to stress regulation of cell migration negative regulation of cellular process cell migration response to wounding cell motility regulation of wound healing, spreading of epidermal cells locomotion negative regulation of cell migration wound healing epithelium development negative regulation of response to stimulus negative regulation of wound healing morphogenesis of an epithelium response to external stimulus negative regulation of response to wounding epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis negative regulation of response to external stimulus regulation of locomotion regulation of wound healing epiboly negative regulation of cell motility wound healing, spreading of cells apoptotic process cell death programmed cell death regulation of growth regulation of developmental growth regulation of developmental process developmental growth negative regulation of developmental process growth organ growth negative regulation of organ growth negative regulation of developmental growth negative regulation of growth regulation of organ growth negative regulation of multicellular organismal process head development brain morphogenesis forebrain development brain development nervous system development forebrain morphogenesis central nervous system development animal organ morphogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation dendritic spine morphogenesis cellular component organization or biogenesis synapse organization dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation generation of neurons cell junction organization neuron development neuron projection organization regulation of epithelial to mesenchymal transition regulation of cell differentiation mesenchyme development negative regulation of cell differentiation negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation behavior rhythmic process circadian behavior locomotory behavior rhythmic behavior circadian rhythm locomotor rhythm axonogenesis regulation of neurogenesis regulation of cell development negative regulation of cellular component organization regulation of cell projection organization negative regulation of axonogenesis regulation of neuron projection development regulation of cellular component organization regulation of nervous system development negative regulation of neurogenesis regulation of axonogenesis negative regulation of nervous system development negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development axon development negative regulation of neuron projection development negative regulation of cell development regulation of plasma membrane bounded cell projection organization regulation of vascular associated smooth muscle cell proliferation negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation negative regulation of vascular associated smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation vascular associated smooth muscle cell proliferation neuron-neuron synaptic transmission phosphatidylinositol metabolic process glycerophospholipid metabolic process lipid modification phospholipid metabolic process organophosphate metabolic process phosphatidylinositol dephosphorylation phospholipid dephosphorylation glycerolipid metabolic process lipid metabolic process membrane organization presynapse organization membrane biogenesis presynaptic membrane assembly membrane assembly cellular component biogenesis presynaptic membrane organization cellular component assembly cell junction assembly synapse assembly presynapse assembly glial cell development gliogenesis axon ensheathment ensheathment of neurons plasma membrane organization endomembrane system organization oligodendrocyte development central nervous system myelination central nervous system myelin maintenance myelination axon ensheathment in central nervous system oligodendrocyte differentiation glial cell differentiation myelin maintenance maternal behavior parental behavior reproductive process multicellular organismal reproductive process reproductive behavior adult behavior regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process regulation of peptidyl-serine phosphorylation peptidyl-serine modification regulation of primary metabolic process peptidyl-serine phosphorylation negative regulation of protein modification process peptidyl-amino acid modification negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of peptidyl-serine phosphorylation protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process regulation of macromolecule metabolic process negative regulation of protein phosphorylation negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation regulation of metabolic process postsynaptic density organization organelle assembly postsynaptic specialization assembly postsynapse assembly excitatory synapse assembly organelle organization postsynaptic specialization organization postsynaptic density assembly positive regulation of cell population proliferation biological process involved in intraspecies interaction between organisms social behavior regulation of cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition negative regulation of cell cycle process cell cycle G1/S phase transition negative regulation of cell cycle phase transition cell cycle regulation of cell cycle cell cycle process regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of cell size regulation of cellular component size regulation of cell size regulation of anatomical structure size rhythmic synaptic transmission multicellular organismal response to stress startle response neuromuscular process prepulse inhibition positive regulation of intracellular signal transduction negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of cell communication negative regulation of signal transduction developmental maturation synapse maturation response to electrical stimulus cellular response to electrical stimulus response to abiotic stimulus cellular response to abiotic stimulus cellular response to environmental stimulus positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription cell-substrate junction assembly negative regulation of cell-substrate junction organization negative regulation of cell-matrix adhesion negative regulation of cell adhesion cell adhesion negative regulation of cell junction assembly regulation of cell-substrate junction organization focal adhesion assembly regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion regulation of cellular component biogenesis negative regulation of focal adhesion assembly regulation of cell junction assembly cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization negative regulation of cell-substrate adhesion regulation of focal adhesion assembly regulation of cell-substrate junction assembly regulation of keratinocyte migration tissue migration negative regulation of epithelial cell migration ameboidal-type cell migration epithelial cell migration negative regulation of keratinocyte migration regulation of epithelial cell migration epithelium migration keratinocyte migration catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis protein catabolic process regulation of catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process modification-dependent protein catabolic process positive regulation of proteolysis ubiquitin-dependent protein catabolic process regulation of osteoblast differentiation negative regulation of osteoblast differentiation osteoblast differentiation ossification central nervous system neuron development central nervous system neuron differentiation central nervous system neuron axonogenesis glycerophospholipid biosynthetic process lipid biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process mitotic cell cycle negative regulation of mitotic cell cycle regulation of mitotic cell cycle negative regulation of G1/S transition of mitotic cell cycle negative regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle mitotic cell cycle phase transition regulation of cellular senescence cellular senescence negative regulation of cellular senescence cellular response to stress vesicle localization regulation of localization cellular localization transport regulation of transport negative regulation of synaptic vesicle clustering synaptic vesicle clustering synaptic vesicle cycle negative regulation of transport establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse localization organelle localization establishment of localization in cell regulation of synaptic vesicle clustering synaptic vesicle localization learning or memory cognition dentate gyrus development pallium development telencephalon development hippocampus development limbic system development negative regulation of excitatory postsynaptic potential meiotic chromosome segregation sexual reproduction microtubule cytoskeleton organization membraneless organelle assembly female gamete generation meiotic cell cycle process gamete generation female meiotic nuclear division meiotic nuclear division chromosome segregation spindle organization organelle fission meiotic cell cycle meiotic spindle organization meiotic spindle assembly spindle assembly nuclear division nuclear chromosome segregation microtubule-based process cytoskeleton organization spindle assembly involved in female meiosis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol myelin sheath adaxonal region myelin sheath neuron spine synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cellular anatomical structure intracellular anatomical structure cytoplasm cytosol myelin sheath adaxonal region myelin sheath neuron spine synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cell junction dendrite dendritic tree cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane extracellular region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen compact myelin Schmidt-Lanterman incisure postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane intracellular membraneless organelle nuclear body membraneless organelle PML body
A	Speckle-type POZ protein	molecular function inhibitor activity molecular function regulator activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding identical protein binding	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process regulation of cellular process protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of proteolysis proteolysis regulation of metabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
B	IPR029023	Tensin-type phosphatase domain	Domain
B	IPR014020	Tensin phosphatase, C2 domain	Domain
B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
B	IPR051281	Dual-specificity lipid and protein phosphatase	Family
B	IPR045101	PTEN, phosphatase domain	Domain
B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
B	IPR035892	C2 domain superfamily	Homologous Superfamily
B	IPR017361	Bifunctional phosphatidylinositol trisphosphate phosphatase/dual specificity phosphatase PTEN	Family
A	IPR056423	BPM/SPOP, BACK domain	Domain
A	IPR000210	BTB/POZ domain	Domain
A	IPR034089	SPOP, C-terminal BACK domain	Domain
A	IPR008974	TRAF-like	Homologous Superfamily
A	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
A	IPR002083	MATH/TRAF domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P60484	Cowden disease prostate cancer Bannayan-Riley-Ruvalcaba syndrome macrocephaly-autism syndrome Noonan syndrome with multiple lentigines head and neck squamous cell carcinoma Proteus syndrome malignant glioma melanoma lipoma breast cancer cancer endometrial cancer lipomatosis nasopharyngeal carcinoma Cowden disease prostate cancer Bannayan-Riley-Ruvalcaba syndrome macrocephaly-autism syndrome Noonan syndrome with multiple lentigines head and neck squamous cell carcinoma Proteus syndrome malignant glioma melanoma lipoma breast cancer cancer endometrial cancer lipomatosis nasopharyngeal carcinoma cholangiocarcinoma familial meningioma secretory meningioma Lhermitte-Duclos disease meningioma polydactyly long QT syndrome intellectual disability renal cell carcinoma granular cell carcinoma hemangioma placental hemangioma spinal meningioma hepatocellular adenoma hypertensive disorder adenocarcinoma Neoplasm Metastasis cerebral convexity meningioma tubular adenocarcinoma adenoid cystic carcinoma clear cell meningioma intramuscular hemangioma sarcomatoid renal cell carcinoma asthma Cowden syndrome 1 leukemia benign meningioma papillary renal cell carcinoma meningothelial meningioma pleomorphic lipoma microcystic meningioma breast carcinoma carcinoma endometrial carcinoma psammomatous meningioma lymphoma transitional meningioma epithelioid hemangioma salivary gland adenoid cystic carcinoma angiomatous meningioma olfactory groove meningioma intraorbital meningioma Sezary syndrome malignant pancreatic neoplasm generalized juvenile polyposis/juvenile polyposis coli glioma susceptibility 2 cutaneous melanoma small cell lung carcinoma parasagittal meningioma developmental coordination disorder mixed glioma prostate intraepithelial neoplasia endometrial hyperplasia chromophobe renal cell carcinoma non-small cell lung carcinoma intrahepatic cholangiocarcinoma collecting duct carcinoma sarcomatoid carcinoma familial prostate carcinoma VACTERL with hydrocephalus anisometropia oligodendroglioma intraventricular meningioma fibrous meningioma ovarian cancer glioblastoma laryngeal squamous cell carcinoma cribriform carcinoma small cell carcinoma papillary meningioma brain disease lung adenocarcinoma hereditary breast ovarian cancer syndrome lung carcinoma stomach disease myopathy lymphatic system disease thyroid gland carcinoma intestinal disease familial melanoma uterine disease colorectal adenocarcinoma oral cavity squamous cell carcinoma invasive ductal breast carcinoma congenital anemia atypical teratoid rhabdoid tumor ovarian carcinoma juvenile polyposis syndrome simple endometrial hyperplasia glioma autism spectrum disorder pancreatic ductal adenocarcinoma cribriform carcinoma of breast melanoma, cutaneous malignant, susceptibility to, 1 liver disease developmental disability hepatocellular carcinoma lung benign neoplasm hibernoma prostate disease lung disease activated PI3K-delta syndrome endometriosis cerebrovascular disorder renal carcinoma undifferentiated carcinoma clear cell renal carcinoma colorectal cancer fatty liver disease astrocytic tumor osteosarcoma ischemia reperfusion injury auditory perceptual disorders ovarian disease kidney disease large cell medulloblastoma skin disease pancreatic neoplasm bone disease hematologic disease breast adenocarcinoma squamous cell carcinoma of lip hereditary breast carcinoma breast disease prostate adenocarcinoma lung cancer dysplastic nevus syndrome hydrocephalus Proteus-like syndrome thyroid cancer, nonmedullary, 2 acute megakaryoblastic leukemia IgA glomerulonephritis PTEN hamartoma tumor syndrome lymphoplasmacyte-rich meningioma endometrium carcinoma in situ tuberculosis urinary bladder cancer complex endometrial hyperplasia segmental outgrowth-lipomatosis-arteriovenous malformation-epidermal nevus syndrome atypical endometrial hyperplasia juvenile dermatomyositis silicosis autism ovarian neoplasm
A	Pharos: O43791	endometrial carcinoma prostate cancer atypical teratoid rhabdoid tumor familial prostate carcinoma malignant colon neoplasm ovarian cancer Prostatic Neoplasms breast carcinoma glioblastoma prostate adenocarcinoma psoriasis endometrial cancer endometrium carcinoma in situ large cell medulloblastoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.