4NJC

RNA Polymerase interacting protein YkzG from Geobacillus stearothermophilus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF07288	e4njcA1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
E	PF07288	e4njcE1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
F	PF07288	e4njcF1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
G	PF07288	e4njcG1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
H	PF07288	e4njcH1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
B	PF07288	e4njcB1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
C	PF07288	e4njcC1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)
D	PF07288	e4njcD1	A: a+b two layers	X: GP2-like	H: Bacterial RNA polymerase subunit epsilon (From Topology)	T: Bacterial RNA polymerase subunit epsilon	F: PF07288	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.730	Alpha Beta	Roll	Ubiquitin-like (UB roll)	RNAP, epsilon subunit-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF07288	RNA polymerase epsilon subunit (RpoY)	RNA polymerase epsilon subunit	RNA polymerase in bacteria is a multisubunit protein complex that is essential for gene expression. This entry represents the epsilon subunit encoded by the rpoY gene. The structure of epsilon shows simple beta sheet with an alpha helix running diago ...	RNA polymerase in bacteria is a multisubunit protein complex that is essential for gene expression. This entry represents the epsilon subunit encoded by the rpoY gene. The structure of epsilon shows simple beta sheet with an alpha helix running diagonally along the back of the structure forming a beta-beta-alpha-beta fold [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Geobacillus stearothermophilus YkzG	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process	transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex DNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009907	RNA polymerase epsilon subunit	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.