4NFW | pdb_00004nfw

Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4nfwl_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
K	d4nfwk_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
J	d4nfwj_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
I	d4nfwi_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
H	d4nfwh_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
G	d4nfwg_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
F	d4nfwf_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
E	d4nfwe_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
D	d4nfwd_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
C	d4nfwc_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
B	d4nfwb_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
A	d4nfwa_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RBM39linker	e4nfwL1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
K	RBM39linker	e4nfwK1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
J	RBM39linker	e4nfwJ1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
I	RBM39linker	e4nfwI1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
H	RBM39linker	e4nfwH1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
G	RBM39linker	e4nfwG1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
F	RBM39linker	e4nfwF1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
E	RBM39linker	e4nfwE1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
D	RBM39linker	e4nfwD1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
C	RBM39linker	e4nfwC1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
B	RBM39linker	e4nfwB1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)
A	RBM39linker	e4nfwA1	A: a/b three-layered sandwiches	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: RBM39linker	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
K	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
J	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
I	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
H	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
G	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
F	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
E	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
D	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
C	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
B	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
A	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.