4MS3 | pdb_00004ms3

Crystal structure of the extracellular domain of human GABA(B) receptor bound to the endogenous agonist GABA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Metabotropic glutamate receptor, ligand-binding domain-like	8077986	4007730	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Type 1 solute binding protein-like	8077987	3000125	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4ms3B1	A: HTH	X: HTH	H: winged helix domain	T: DctP	F:	ECOD (20:10:01)
A		e4ms3A1	A: HTH	X: HTH	H: winged helix domain	T: DctP	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
A	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01094	Receptor family ligand binding region (ANF_receptor)	Receptor family ligand binding region	This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.	Domain
A	PF01094	Receptor family ligand binding region (ANF_receptor)	Receptor family ligand binding region	This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Gamma-aminobutyric acid type B receptor subunit 2	protein heterodimerization activity protein binding binding protein dimerization activity G protein-coupled GABA receptor activity GABA receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity	regulation of biological process signaling biological regulation cell-cell signaling neuron-glial cell signaling cellular process cell communication gamma-aminobutyric acid signaling pathway regulation of molecular function regulation of adenylate cyclase activity regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity negative regulation of adenylate cyclase activity regulation of biological process signaling biological regulation cell-cell signaling neuron-glial cell signaling cellular process cell communication gamma-aminobutyric acid signaling pathway regulation of molecular function regulation of adenylate cyclase activity regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity negative regulation of adenylate cyclase activity trans-synaptic signaling synaptic signaling anterograde trans-synaptic signaling chemical synaptic transmission cellular response to stimulus regulation of cellular process response to stimulus adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction synaptic transmission, GABAergic	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex receptor complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex receptor complex GABA receptor complex G protein-coupled receptor dimeric complex plasma membrane signaling receptor complex G protein-coupled receptor complex G protein-coupled GABA receptor complex G protein-coupled receptor heterodimeric complex intracellular anatomical structure cytoplasm cell projection neuron projection plasma membrane bounded cell projection
A	Gamma-aminobutyric acid type B receptor subunit 1	protein binding binding extracellular matrix protein binding protein heterodimerization activity protein dimerization activity G protein-coupled GABA receptor activity GABA receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity	developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation regulation of biological process signaling biological regulation cell-cell signaling neuron-glial cell signaling cell communication gamma-aminobutyric acid signaling pathway developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation regulation of biological process signaling biological regulation cell-cell signaling neuron-glial cell signaling cell communication gamma-aminobutyric acid signaling pathway regulation of localization negative regulation of amino acid transport nitrogen compound transport negative regulation of amine transport transport negative regulation of biological process negative regulation of transport localization negative regulation of secretion gamma-aminobutyric acid transport negative regulation of gamma-aminobutyric acid secretion regulation of amino acid transport organic anion transport gamma-aminobutyric acid secretion carboxylic acid transport regulation of transport secretion regulation of gamma-aminobutyric acid secretion acid secretion establishment of localization regulation of secretion organic acid transport amino acid transport amine transport negative regulation of organic acid transport regulation of organic acid transport regulation of amine transport monoamine transport regulation of cellular process regulation of catecholamine secretion organic hydroxy compound transport dopamine transport secretion by cell regulation of secretion by cell catecholamine transport negative regulation of dopamine secretion signal release negative regulation of cellular process negative regulation of secretion by cell export from cell negative regulation of catecholamine secretion dopamine secretion catecholamine secretion regulation of dopamine secretion response to stimulus response to alcohol response to chemical response to oxygen-containing compound response to ethanol negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation epinephrine secretion epinephrine transport regulation of epinephrine secretion organic cation transport negative regulation of epinephrine secretion cellular response to stimulus adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction trans-synaptic signaling regulation of signaling negative regulation of signaling modulation of chemical synaptic transmission negative regulation of synaptic transmission negative regulation of cell communication chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication synaptic transmission, GABAergic response to nicotine positive regulation of cell communication regulation of hormone secretion regulation of peptide secretion positive regulation of biological process positive regulation of secretion by cell hormone secretion peptide secretion positive regulation of hormone secretion positive regulation of secretion regulation of biological quality regulation of peptide hormone secretion positive regulation of cellular process positive regulation of peptide secretion growth hormone secretion regulation of hormone levels regulation of growth hormone secretion regulation of peptide transport positive regulation of peptide hormone secretion peptide transport positive regulation of growth hormone secretion positive regulation of transport peptide hormone secretion hormone transport positive regulation of signaling regulation of glutamate secretion positive regulation of amine transport glutamate secretion positive regulation of glutamate secretion positive regulation of organic acid transport acidic amino acid transport positive regulation of amino acid transport dicarboxylic acid transport	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex receptor complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex receptor complex GABA receptor complex G protein-coupled receptor dimeric complex plasma membrane signaling receptor complex G protein-coupled receptor complex G protein-coupled GABA receptor complex membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope cytoplasm organelle membrane G protein-coupled receptor heterodimeric complex presynapse presynaptic membrane GABA-ergic synapse glutamatergic synapse organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection neuron spine dendritic spine Schaffer collateral - CA1 synapse axon cell leading edge axolemma leading edge membrane neuron projection membrane main axon cell projection membrane cell body neuronal cell body extracellular region extracellular space transport vesicle intracellular vesicle cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR017978	GPCR family 3, C-terminal	Domain
B	IPR017979	GPCR, family 3, conserved site	Conserved Site
B	IPR002457	GPCR family 3, gamma-aminobutyric acid receptor, type B2	Family
B	IPR000337	GPCR, family 3	Family
B	IPR002455	GPCR family 3, GABA-B receptor	Family
B	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
B	IPR041689	Gamma-aminobutyric acid type B receptor subunit 2, coiled-coil domain	Domain
B	IPR001828	Receptor, ligand binding region	Domain
A	IPR017978	GPCR family 3, C-terminal	Domain
A	IPR000436	Sushi/SCR/CCP domain	Domain
A	IPR002455	GPCR family 3, GABA-B receptor	Family
A	IPR035976	Sushi/SCR/CCP superfamily	Homologous Superfamily
A	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
A	IPR002456	GPCR family 3, gamma-aminobutyric acid receptor, type B1	Family
A	IPR001828	Receptor, ligand binding region	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: O75899	Muscle spasticity of spinal origin nicotine dependence pituitary cancer subependymal giant cell astrocytoma adrenal cortex adenoma atypical teratoid rhabdoid tumor interstitial cystitis major depressive disorder medulloblastoma narcolepsy oligodendroglioma primitive neuroectodermal tumor astrocytic tumor autism developmental and epileptic encephalopathy, 59 Muscle spasticity of spinal origin nicotine dependence pituitary cancer subependymal giant cell astrocytoma adrenal cortex adenoma atypical teratoid rhabdoid tumor interstitial cystitis major depressive disorder medulloblastoma narcolepsy oligodendroglioma primitive neuroectodermal tumor astrocytic tumor autism developmental and epileptic encephalopathy, 59 glioblastoma interstitial lung disease malignant ependymoma neurodevelopmental disorder with poor language and loss of hand skills pilocytic astrocytoma psoriasis atypical Rett syndrome epilepsy intellectual disability large cell medulloblastoma malignant glioma
A	Pharos: Q9UBS5	alcohol abuse cocaine dependence cocaine abuse lymphoplasmacytic lymphoma medulloblastoma narcolepsy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma psoriatic arthritis atypical teratoid rhabdoid tumor tuberculosis Autistic Disorder endogenous depression lung cancer malignant ependymoma alcohol abuse cocaine dependence cocaine abuse lymphoplasmacytic lymphoma medulloblastoma narcolepsy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma psoriatic arthritis atypical teratoid rhabdoid tumor tuberculosis Autistic Disorder endogenous depression lung cancer malignant ependymoma nasopharyngeal disease pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor schizophrenia autism glioblastoma lung carcinoma malignant glioma osteosarcoma Pick disease psoriasis subependymal giant cell astrocytoma autism spectrum disorder cutaneous lupus erythematosus large cell medulloblastoma

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	G Protein-Coupled Receptors: Class C	GABA_B receptor ectodomain GBR1-GBR2 heterodimer, apo form

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.