4MCJ | pdb_00004mcj

Crystal structure of a putative nucleoside deoxyribosyltransferase (BDI_0649) from Parabacteroides distasonis ATCC 8503 at 2.40 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
C	SCOP2 Family	BDI_0649-like	8044703	4004089	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	N-(deoxy)ribosyltransferase-like	8052029	3001392	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Nuc_deoxyri_tr2	e4mcjA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
B	Nuc_deoxyri_tr2	e4mcjB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
C	Nuc_deoxyri_tr2	e4mcjC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
E	Nuc_deoxyri_tr2	e4mcjE1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
F	Nuc_deoxyri_tr2	e4mcjF1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
G	Nuc_deoxyri_tr2	e4mcjG1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
H	Nuc_deoxyri_tr2	e4mcjH1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
I	Nuc_deoxyri_tr2	e4mcjI1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
J	Nuc_deoxyri_tr2	e4mcjJ1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)
D	Nuc_deoxyri_tr2	e4mcjD1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: Nuc_deoxyri_tr2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
F	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
G	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
H	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
I	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
J	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF15891	Nucleoside 2-deoxyribosyltransferase like (Nuc_deoxyri_tr2)	Nucleoside 2-deoxyribosyltransferase like	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR039470	Nucleoside 2-deoxyribosyltransferase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.