Nucleotide-induced asymmetry within atpase activator ring drives s54-RNAP interaction and ATP hydrolysis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | e4lzzH1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| L | e4lzzL1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| N | e4lzzN1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| U | e4lzzU1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| X | e4lzzX1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| W | e4lzzW1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| V | e4lzzV1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| T | e4lzzT1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| S | e4lzzS1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| R | e4lzzR1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| Q | e4lzzQ1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| P | e4lzzP1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| O | e4lzzO1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| M | e4lzzM1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| K | e4lzzK1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| J | e4lzzJ1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| I | e4lzzI1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| G | e4lzzG1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| F | e4lzzF1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| E | e4lzzE1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| D | e4lzzD1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| C | e4lzzC1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| B | e4lzzB1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) | |
| A | e4lzzA1 | A: CCHHC domain | X: CCHHC domain | H: CCHHC domain | T: FKBP_C | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF25601 | AAA+ ATPase lid domain (AAA_lid_14) | AAA+ ATPase lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF00158 | Sigma-54 interaction domain (Sigma54_activat) | Sigma-54 interaction domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
| IPR058031 | NorR-like, AAA+ ATPase lid domain | Domain | |
| IPR011006 | CheY-like superfamily | Homologous Superfamily | |
| IPR002197 | DNA binding HTH domain, Fis-type | Domain | |
| IPR001789 | Signal transduction response regulator, receiver domain | Domain | |
| IPR002078 | RNA polymerase sigma factor 54 interaction domain | Domain | |
| IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 | Binding Site | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR025943 | Sigma-54 interaction domain, ATP-binding site 2 | Binding Site | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |














