4LW9 | pdb_00004lw9

Crystal structure of Vibrio cholera major pseudopilin EpsG

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth R]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
K [auth Q]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
J [auth L]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
H [auth J]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Pili subunits	8077731	3000097	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth R]	T2SSG	e4lw9R1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
K [auth Q]	T2SSG	e4lw9Q1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
J [auth L]	T2SSG	e4lw9L1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
I [auth K]	T2SSG	e4lw9K1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
H [auth J]	T2SSG	e4lw9J1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
G [auth I]	T2SSG	e4lw9I1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
F	T2SSG	e4lw9F1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
E	T2SSG	e4lw9E1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
D	T2SSG	e4lw9D1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
C	T2SSG	e4lw9C1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
B	T2SSG	e4lw9B1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)
A	T2SSG	e4lw9A1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: T2SSG	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L [auth R]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
K [auth Q]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
J [auth L]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
I [auth K]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
H [auth J]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
G [auth I]	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
F	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
E	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
D	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
C	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
B	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)
A	3.30.700.10	Alpha Beta	2-Layer Sandwich	Glycoprotein, Type 4 Pilin	Glycoprotein, Type 4 Pilin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	PF08334	Type II secretion system (T2SS), protein G (T2SSG)	Type II secretion system (T2SS), protein G	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	Type II secretion system protein G	-	protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex type II protein secretion system complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR010054	Type II secretion system protein GspG	Family
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR013545	Type II secretion system protein GspG, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR050470	T4P/T2SS_Core	Unknown
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR000983	General secretion pathway protein G-type pilin	Family
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR012902	Prokaryotic N-terminal methylation site	PTM
A, B, C, D, E, A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth Q], L [auth R]	IPR045584	Pilin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.