4K6T | pdb_00004k6t

Crystal structure of Ad37 fiber knob in complex with trivalent sialic acid inhibitor ME0385

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth G]	d4k6tg_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)
E [auth F]	d4k6tf_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)
D [auth E]	d4k6te_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)
C	d4k6tc_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)
B	d4k6tb_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)
A	d4k6ta_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D37 ) [TaxId: 52275 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth G]		e4k6tG1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)
E [auth F]		e4k6tF1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)
D [auth E]		e4k6tE1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)
C		e4k6tC1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)
B		e4k6tB1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)
A		e4k6tA1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: C1-set	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth G]	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
E [auth F]	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
D [auth E]	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
C	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
B	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
A	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	Fiber protein	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR000978	Adenoviral fibre protein, knob	Domain
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR000931	Adenovirus fibre protein	Family
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR000939	Adenoviral fibre protein, repeat/shaft region	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.