4JSD | pdb_00004jsd

The X-ray crystal structure of a thermophilic cellobiose binding protein bound with laminaribiose

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPhosphate binding protein-like 8100711 4000229 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyType 2 solute binding protein-like 8100712 3000083 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae4jsdA1 A: Four-helical up-and-down bundleX: Glycosyl hydrolase domainH: Glycosyl hydrolase domainT: WH2F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.90.76.10 Alpha Beta Alpha-Beta Complex Dipeptide-binding Protein domain 1CATH (4.3.0)
A3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00496Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)Bacterial extracellular solute-binding proteins, family 5 MiddleThe borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000914Solute-binding protein family 5 domainDomain
IPR039424Solute-binding protein family 5Family